From 7c3719a6736f4deff2c5ed3255fcde095299f989 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 10 Sep 2024 00:21:00 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 628177b6c38840c44ff558bf45fb3fd5aae406fa
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-07-13 15:35:10 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 69af2577296499ce04035ed5047f2dd06a9cce49
Branch  : main
Author  : Travis Wrightsman <travis@wrightsman.org>
Time    : 2024-07-13 15:34:18 +0000
Message : Merge pull request #156 from datacarpentry/sheraaronhurt-patch-1

Update who sends AWS.md
---
 404.html                         |  6 ++---
 AMI-setup.html                   |  8 +++----
 CODE_OF_CONDUCT.html             |  4 ++--
 LICENSE.html                     |  4 ++--
 faq.html                         |  4 ++--
 index.html                       | 38 ++++++++++++++++----------------
 instructor-notes.html            |  6 ++---
 instructor/404.html              |  6 ++---
 instructor/AMI-setup.html        |  8 +++----
 instructor/CODE_OF_CONDUCT.html  |  4 ++--
 instructor/LICENSE.html          |  4 ++--
 instructor/faq.html              |  4 ++--
 instructor/index.html            | 38 ++++++++++++++++----------------
 instructor/instructor-notes.html |  6 ++---
 instructor/profiles.html         |  6 ++---
 instructor/reference.html        |  4 ++--
 instructor/teaching_demos.html   |  4 ++--
 pkgdown.yml                      |  2 +-
 profiles.html                    |  6 ++---
 reference.html                   |  4 ++--
 teaching_demos.html              |  4 ++--
 21 files changed, 85 insertions(+), 85 deletions(-)

diff --git a/404.html b/404.html
index 805a0b4..da55e86 100644
--- a/404.html
+++ b/404.html
@@ -250,7 +250,7 @@ <h1>Page not found</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -272,8 +272,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-09-03",
-  "datePublished": "2024-09-03"
+  "dateModified": "2024-09-10",
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/AMI-setup.html b/AMI-setup.html
index 67b60ef..2a411c4 100644
--- a/AMI-setup.html
+++ b/AMI-setup.html
@@ -331,7 +331,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Connect to your Amazon Instance (MacOS/Linux)
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
 <li><p>You should see that you have one instance. To proceed, the
@@ -388,7 +388,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Connect to your Amazon instance (Windows)
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Download the PuTTY application at: <a href="https://the.earth.li/~sgtatham/putty/latest/x86/putty.exe" class="external-link">http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe</a></p></li>
 <li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
@@ -504,7 +504,7 @@ <h3 class="callout-title">Warning</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -527,7 +527,7 @@ <h3 class="callout-title">Warning</h3>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 9e45d35..31ae3d8 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -277,7 +277,7 @@ <h1>Contributor Code of Conduct</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -300,7 +300,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index cc14b77..b020b12 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -326,7 +326,7 @@ <h1>Licenses</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -349,7 +349,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/faq.html b/faq.html
index 51f1034..8934270 100644
--- a/faq.html
+++ b/faq.html
@@ -449,7 +449,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -472,7 +472,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2024-07-13",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 6aa5f06..dade6e6 100644
--- a/index.html
+++ b/index.html
@@ -396,7 +396,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Windows should
@@ -476,7 +476,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Mac OS X
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Mac should
@@ -498,7 +498,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Linux should
@@ -618,7 +618,7 @@ <h3 class="accordion-header" id="headingSpoiler4">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler4" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler4" aria-labelledby="headingSpoiler4">
+<div id="collapseSpoiler4" class="accordion-collapse collapse" aria-labelledby="headingSpoiler4" data-bs-parent="#accordionSpoiler4">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb1">
@@ -641,7 +641,7 @@ <h3 class="accordion-header" id="headingSpoiler5">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler5" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler5" aria-labelledby="headingSpoiler5">
+<div id="collapseSpoiler5" class="accordion-collapse collapse" aria-labelledby="headingSpoiler5" data-bs-parent="#accordionSpoiler5">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb2">
@@ -667,7 +667,7 @@ <h3 class="accordion-header" id="headingSpoiler6">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler6" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler6" aria-labelledby="headingSpoiler6">
+<div id="collapseSpoiler6" class="accordion-collapse collapse" aria-labelledby="headingSpoiler6" data-bs-parent="#accordionSpoiler6">
 <div class="accordion-body">
 <p>To install FastQC, type:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -687,7 +687,7 @@ <h3 class="accordion-header" id="headingSpoiler7">
   FastQC Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler7" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler7" aria-labelledby="headingSpoiler7">
+<div id="collapseSpoiler7" class="accordion-collapse collapse" aria-labelledby="headingSpoiler7" data-bs-parent="#accordionSpoiler7">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -733,7 +733,7 @@ <h3 class="accordion-header" id="headingSpoiler8">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler8" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler8" aria-labelledby="headingSpoiler8">
+<div id="collapseSpoiler8" class="accordion-collapse collapse" aria-labelledby="headingSpoiler8" data-bs-parent="#accordionSpoiler8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -752,7 +752,7 @@ <h3 class="accordion-header" id="headingSpoiler9">
   Trimmomatic Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler9" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler9" aria-labelledby="headingSpoiler9">
+<div id="collapseSpoiler9" class="accordion-collapse collapse" aria-labelledby="headingSpoiler9" data-bs-parent="#accordionSpoiler9">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -791,7 +791,7 @@ <h3 class="accordion-header" id="headingSpoiler10">
   Simplify the Invocation, or to Test your installation if you installed with miniconda3:
   </h3>
 </button>
-<div id="collapseSpoiler10" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler10" aria-labelledby="headingSpoiler10">
+<div id="collapseSpoiler10" class="accordion-collapse collapse" aria-labelledby="headingSpoiler10" data-bs-parent="#accordionSpoiler10">
 <div class="accordion-body">
 <p>To simplify the invocation you could also create a script in the
 ~/bin folder:</p>
@@ -823,7 +823,7 @@ <h3 class="accordion-header" id="headingSpoiler11">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler11" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler11" aria-labelledby="headingSpoiler11">
+<div id="collapseSpoiler11" class="accordion-collapse collapse" aria-labelledby="headingSpoiler11" data-bs-parent="#accordionSpoiler11">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb15">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -842,7 +842,7 @@ <h3 class="accordion-header" id="headingSpoiler12">
   BWA Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler12" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler12" aria-labelledby="headingSpoiler12">
+<div id="collapseSpoiler12" class="accordion-collapse collapse" aria-labelledby="headingSpoiler12" data-bs-parent="#accordionSpoiler12">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -877,7 +877,7 @@ <h3 class="accordion-header" id="headingSpoiler13">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler13" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler13" aria-labelledby="headingSpoiler13">
+<div id="collapseSpoiler13" class="accordion-collapse collapse" aria-labelledby="headingSpoiler13" data-bs-parent="#accordionSpoiler13">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb18">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -911,7 +911,7 @@ <h3 class="accordion-header" id="headingSpoiler14">
   SAMtools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler14" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler14" aria-labelledby="headingSpoiler14">
+<div id="collapseSpoiler14" class="accordion-collapse collapse" aria-labelledby="headingSpoiler14" data-bs-parent="#accordionSpoiler14">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -952,7 +952,7 @@ <h3 class="accordion-header" id="headingSpoiler15">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler15" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler15" aria-labelledby="headingSpoiler15">
+<div id="collapseSpoiler15" class="accordion-collapse collapse" aria-labelledby="headingSpoiler15" data-bs-parent="#accordionSpoiler15">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb22">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -971,7 +971,7 @@ <h3 class="accordion-header" id="headingSpoiler16">
   BCF tools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler16" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler16" aria-labelledby="headingSpoiler16">
+<div id="collapseSpoiler16" class="accordion-collapse collapse" aria-labelledby="headingSpoiler16" data-bs-parent="#accordionSpoiler16">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -1033,7 +1033,7 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -1055,8 +1055,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-09-03",
-  "datePublished": "2024-09-03"
+  "dateModified": "2024-09-10",
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 0bae766..24a4aad 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -274,7 +274,7 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -296,8 +296,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-09-03",
-  "datePublished": "2024-09-03"
+  "dateModified": "2024-09-10",
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index e263726..9369abc 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -244,7 +244,7 @@ <h1>Page not found</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -266,8 +266,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-09-03",
-  "datePublished": "2024-09-03"
+  "dateModified": "2024-09-10",
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor/AMI-setup.html b/instructor/AMI-setup.html
index d0022a7..942abd3 100644
--- a/instructor/AMI-setup.html
+++ b/instructor/AMI-setup.html
@@ -327,7 +327,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Connect to your Amazon Instance (MacOS/Linux)
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
 <li><p>You should see that you have one instance. To proceed, the
@@ -384,7 +384,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Connect to your Amazon instance (Windows)
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Download the PuTTY application at: <a href="https://the.earth.li/~sgtatham/putty/latest/x86/putty.exe" class="external-link">http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe</a></p></li>
 <li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
@@ -500,7 +500,7 @@ <h3 class="callout-title">Warning</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -523,7 +523,7 @@ <h3 class="callout-title">Warning</h3>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index d6e3898..558cfc5 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -273,7 +273,7 @@ <h1>Contributor Code of Conduct</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -296,7 +296,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index ae31742..594eb7a 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -322,7 +322,7 @@ <h1>Licenses</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -345,7 +345,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor/faq.html b/instructor/faq.html
index b6e2e79..d259b31 100644
--- a/instructor/faq.html
+++ b/instructor/faq.html
@@ -445,7 +445,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -468,7 +468,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2024-07-13",
-  "datePublished": "2024-09-03"
+  "datePublished": "2024-09-10"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 19de5ff..f30b6fb 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -395,7 +395,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Windows should
@@ -475,7 +475,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Mac OS X
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Mac should
@@ -497,7 +497,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Linux should
@@ -617,7 +617,7 @@ <h3 class="accordion-header" id="headingSpoiler4">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler4" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler4" aria-labelledby="headingSpoiler4">
+<div id="collapseSpoiler4" class="accordion-collapse collapse" aria-labelledby="headingSpoiler4" data-bs-parent="#accordionSpoiler4">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb1">
@@ -640,7 +640,7 @@ <h3 class="accordion-header" id="headingSpoiler5">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler5" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler5" aria-labelledby="headingSpoiler5">
+<div id="collapseSpoiler5" class="accordion-collapse collapse" aria-labelledby="headingSpoiler5" data-bs-parent="#accordionSpoiler5">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb2">
@@ -666,7 +666,7 @@ <h3 class="accordion-header" id="headingSpoiler6">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler6" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler6" aria-labelledby="headingSpoiler6">
+<div id="collapseSpoiler6" class="accordion-collapse collapse" aria-labelledby="headingSpoiler6" data-bs-parent="#accordionSpoiler6">
 <div class="accordion-body">
 <p>To install FastQC, type:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -686,7 +686,7 @@ <h3 class="accordion-header" id="headingSpoiler7">
   FastQC Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler7" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler7" aria-labelledby="headingSpoiler7">
+<div id="collapseSpoiler7" class="accordion-collapse collapse" aria-labelledby="headingSpoiler7" data-bs-parent="#accordionSpoiler7">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -732,7 +732,7 @@ <h3 class="accordion-header" id="headingSpoiler8">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler8" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler8" aria-labelledby="headingSpoiler8">
+<div id="collapseSpoiler8" class="accordion-collapse collapse" aria-labelledby="headingSpoiler8" data-bs-parent="#accordionSpoiler8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -751,7 +751,7 @@ <h3 class="accordion-header" id="headingSpoiler9">
   Trimmomatic Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler9" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler9" aria-labelledby="headingSpoiler9">
+<div id="collapseSpoiler9" class="accordion-collapse collapse" aria-labelledby="headingSpoiler9" data-bs-parent="#accordionSpoiler9">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -790,7 +790,7 @@ <h3 class="accordion-header" id="headingSpoiler10">
   Simplify the Invocation, or to Test your installation if you installed with miniconda3:
   </h3>
 </button>
-<div id="collapseSpoiler10" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler10" aria-labelledby="headingSpoiler10">
+<div id="collapseSpoiler10" class="accordion-collapse collapse" aria-labelledby="headingSpoiler10" data-bs-parent="#accordionSpoiler10">
 <div class="accordion-body">
 <p>To simplify the invocation you could also create a script in the
 ~/bin folder:</p>
@@ -822,7 +822,7 @@ <h3 class="accordion-header" id="headingSpoiler11">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler11" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler11" aria-labelledby="headingSpoiler11">
+<div id="collapseSpoiler11" class="accordion-collapse collapse" aria-labelledby="headingSpoiler11" data-bs-parent="#accordionSpoiler11">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb15">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -841,7 +841,7 @@ <h3 class="accordion-header" id="headingSpoiler12">
   BWA Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler12" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler12" aria-labelledby="headingSpoiler12">
+<div id="collapseSpoiler12" class="accordion-collapse collapse" aria-labelledby="headingSpoiler12" data-bs-parent="#accordionSpoiler12">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -876,7 +876,7 @@ <h3 class="accordion-header" id="headingSpoiler13">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler13" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler13" aria-labelledby="headingSpoiler13">
+<div id="collapseSpoiler13" class="accordion-collapse collapse" aria-labelledby="headingSpoiler13" data-bs-parent="#accordionSpoiler13">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb18">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -910,7 +910,7 @@ <h3 class="accordion-header" id="headingSpoiler14">
   SAMtools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler14" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler14" aria-labelledby="headingSpoiler14">
+<div id="collapseSpoiler14" class="accordion-collapse collapse" aria-labelledby="headingSpoiler14" data-bs-parent="#accordionSpoiler14">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -951,7 +951,7 @@ <h3 class="accordion-header" id="headingSpoiler15">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler15" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler15" aria-labelledby="headingSpoiler15">
+<div id="collapseSpoiler15" class="accordion-collapse collapse" aria-labelledby="headingSpoiler15" data-bs-parent="#accordionSpoiler15">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb22">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -970,7 +970,7 @@ <h3 class="accordion-header" id="headingSpoiler16">
   BCF tools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler16" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler16" aria-labelledby="headingSpoiler16">
+<div id="collapseSpoiler16" class="accordion-collapse collapse" aria-labelledby="headingSpoiler16" data-bs-parent="#accordionSpoiler16">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -1032,7 +1032,7 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -1054,8 +1054,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/index.html",
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-  "dateModified": "2024-09-03",
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diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index a0fc320..6245787 100644
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@@ -268,7 +268,7 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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@@ -290,8 +290,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
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   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/instructor-notes.html",
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-  "dateModified": "2024-09-03",
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diff --git a/instructor/profiles.html b/instructor/profiles.html
index 9368a73..3ca2f99 100644
--- a/instructor/profiles.html
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@@ -232,7 +232,7 @@ <h1>Learner Profiles</h1>
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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 	<div id="to-top">
@@ -254,8 +254,8 @@ <h1>Learner Profiles</h1>
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   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-09-03",
-  "datePublished": "2024-09-03"
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 }
 
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diff --git a/instructor/reference.html b/instructor/reference.html
index 4c973a4..e6a969c 100644
--- a/instructor/reference.html
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@@ -265,7 +265,7 @@ <h1>Glossary</h1>
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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 	<div id="to-top">
@@ -288,7 +288,7 @@ <h1>Glossary</h1>
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   "dateCreated": "2015-06-03",
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diff --git a/instructor/teaching_demos.html b/instructor/teaching_demos.html
index 192fea3..d126f43 100644
--- a/instructor/teaching_demos.html
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@@ -321,7 +321,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -344,7 +344,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/teaching_demos.html",
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diff --git a/pkgdown.yml b/pkgdown.yml
index 4614dcb..40f4e03 100644
--- a/pkgdown.yml
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@@ -2,4 +2,4 @@ pandoc: 3.1.11
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index cefa15f..0c1f7b7 100644
--- a/profiles.html
+++ b/profiles.html
@@ -238,7 +238,7 @@ <h1>Learner Profiles</h1>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -260,8 +260,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-09-03",
-  "datePublished": "2024-09-03"
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 }
 
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diff --git a/reference.html b/reference.html
index 524f688..2b025e4 100644
--- a/reference.html
+++ b/reference.html
@@ -269,7 +269,7 @@ <h1>Glossary</h1>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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 	<div id="to-top">
@@ -292,7 +292,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/reference.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
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diff --git a/teaching_demos.html b/teaching_demos.html
index 4415c78..45fac82 100644
--- a/teaching_demos.html
+++ b/teaching_demos.html
@@ -325,7 +325,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.6" class="external-link">sandpaper (0.16.6)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.7" class="external-link">sandpaper (0.16.7)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
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 	<div id="to-top">
@@ -348,7 +348,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
   "identifier": "https://datacarpentry.github.io/genomics-workshop/teaching_demos.html",
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