From 089cf2438b789629c1a938b29b838b405bf43f09 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 6 Aug 2024 00:18:32 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 628177b6c38840c44ff558bf45fb3fd5aae406fa
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-07-13 15:35:10 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 69af2577296499ce04035ed5047f2dd06a9cce49
Branch  : main
Author  : Travis Wrightsman <travis@wrightsman.org>
Time    : 2024-07-13 15:34:18 +0000
Message : Merge pull request #156 from datacarpentry/sheraaronhurt-patch-1

Update who sends AWS.md
---
 404.html                         |  4 ++--
 AMI-setup.html                   |  2 +-
 CODE_OF_CONDUCT.html             |  2 +-
 LICENSE.html                     |  2 +-
 faq.html                         |  2 +-
 index.html                       | 36 ++++++++++++++++----------------
 instructor-notes.html            |  4 ++--
 instructor/404.html              |  4 ++--
 instructor/AMI-setup.html        |  2 +-
 instructor/CODE_OF_CONDUCT.html  |  2 +-
 instructor/LICENSE.html          |  2 +-
 instructor/faq.html              |  2 +-
 instructor/index.html            | 36 ++++++++++++++++----------------
 instructor/instructor-notes.html |  4 ++--
 instructor/profiles.html         |  4 ++--
 instructor/reference.html        |  2 +-
 instructor/teaching_demos.html   |  2 +-
 pkgdown.yml                      |  2 +-
 profiles.html                    |  4 ++--
 reference.html                   |  2 +-
 teaching_demos.html              |  2 +-
 21 files changed, 61 insertions(+), 61 deletions(-)

diff --git a/404.html b/404.html
index 7cba047..4b81af6 100644
--- a/404.html
+++ b/404.html
@@ -273,8 +273,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
+  "dateModified": "2024-08-06",
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/AMI-setup.html b/AMI-setup.html
index d1845f7..514a3c6 100644
--- a/AMI-setup.html
+++ b/AMI-setup.html
@@ -531,7 +531,7 @@ <h3 class="callout-title">Warning<a class="anchor" aria-label="anchor" href="#wa
   "identifier": "https://datacarpentry.github.io/genomics-workshop/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 66017fa..d2f5b20 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -300,7 +300,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 75fc314..805ff73 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -352,7 +352,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/faq.html b/faq.html
index d5ec98c..c89bc01 100644
--- a/faq.html
+++ b/faq.html
@@ -474,7 +474,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2024-07-13",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index acaff4b..2076e29 100644
--- a/index.html
+++ b/index.html
@@ -399,7 +399,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Windows should
@@ -479,7 +479,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Mac OS X
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Mac should
@@ -501,7 +501,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Linux should
@@ -621,7 +621,7 @@ <h3 class="accordion-header" id="headingSpoiler4">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler4" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler4" aria-labelledby="headingSpoiler4">
+<div id="collapseSpoiler4" class="accordion-collapse collapse" aria-labelledby="headingSpoiler4" data-bs-parent="#accordionSpoiler4">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb1">
@@ -644,7 +644,7 @@ <h3 class="accordion-header" id="headingSpoiler5">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler5" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler5" aria-labelledby="headingSpoiler5">
+<div id="collapseSpoiler5" class="accordion-collapse collapse" aria-labelledby="headingSpoiler5" data-bs-parent="#accordionSpoiler5">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb2">
@@ -670,7 +670,7 @@ <h3 class="accordion-header" id="headingSpoiler6">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler6" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler6" aria-labelledby="headingSpoiler6">
+<div id="collapseSpoiler6" class="accordion-collapse collapse" aria-labelledby="headingSpoiler6" data-bs-parent="#accordionSpoiler6">
 <div class="accordion-body">
 <p>To install FastQC, type:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -690,7 +690,7 @@ <h3 class="accordion-header" id="headingSpoiler7">
   FastQC Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler7" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler7" aria-labelledby="headingSpoiler7">
+<div id="collapseSpoiler7" class="accordion-collapse collapse" aria-labelledby="headingSpoiler7" data-bs-parent="#accordionSpoiler7">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -736,7 +736,7 @@ <h3 class="accordion-header" id="headingSpoiler8">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler8" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler8" aria-labelledby="headingSpoiler8">
+<div id="collapseSpoiler8" class="accordion-collapse collapse" aria-labelledby="headingSpoiler8" data-bs-parent="#accordionSpoiler8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -755,7 +755,7 @@ <h3 class="accordion-header" id="headingSpoiler9">
   Trimmomatic Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler9" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler9" aria-labelledby="headingSpoiler9">
+<div id="collapseSpoiler9" class="accordion-collapse collapse" aria-labelledby="headingSpoiler9" data-bs-parent="#accordionSpoiler9">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -794,7 +794,7 @@ <h3 class="accordion-header" id="headingSpoiler10">
   Simplify the Invocation, or to Test your installation if you installed with miniconda3:
   </h3>
 </button>
-<div id="collapseSpoiler10" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler10" aria-labelledby="headingSpoiler10">
+<div id="collapseSpoiler10" class="accordion-collapse collapse" aria-labelledby="headingSpoiler10" data-bs-parent="#accordionSpoiler10">
 <div class="accordion-body">
 <p>To simplify the invocation you could also create a script in the
 ~/bin folder:</p>
@@ -826,7 +826,7 @@ <h3 class="accordion-header" id="headingSpoiler11">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler11" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler11" aria-labelledby="headingSpoiler11">
+<div id="collapseSpoiler11" class="accordion-collapse collapse" aria-labelledby="headingSpoiler11" data-bs-parent="#accordionSpoiler11">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb15">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -845,7 +845,7 @@ <h3 class="accordion-header" id="headingSpoiler12">
   BWA Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler12" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler12" aria-labelledby="headingSpoiler12">
+<div id="collapseSpoiler12" class="accordion-collapse collapse" aria-labelledby="headingSpoiler12" data-bs-parent="#accordionSpoiler12">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -880,7 +880,7 @@ <h3 class="accordion-header" id="headingSpoiler13">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler13" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler13" aria-labelledby="headingSpoiler13">
+<div id="collapseSpoiler13" class="accordion-collapse collapse" aria-labelledby="headingSpoiler13" data-bs-parent="#accordionSpoiler13">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb18">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -915,7 +915,7 @@ <h3 class="accordion-header" id="headingSpoiler14">
   SAMtools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler14" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler14" aria-labelledby="headingSpoiler14">
+<div id="collapseSpoiler14" class="accordion-collapse collapse" aria-labelledby="headingSpoiler14" data-bs-parent="#accordionSpoiler14">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -956,7 +956,7 @@ <h3 class="accordion-header" id="headingSpoiler15">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler15" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler15" aria-labelledby="headingSpoiler15">
+<div id="collapseSpoiler15" class="accordion-collapse collapse" aria-labelledby="headingSpoiler15" data-bs-parent="#accordionSpoiler15">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb22">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -975,7 +975,7 @@ <h3 class="accordion-header" id="headingSpoiler16">
   BCF tools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler16" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler16" aria-labelledby="headingSpoiler16">
+<div id="collapseSpoiler16" class="accordion-collapse collapse" aria-labelledby="headingSpoiler16" data-bs-parent="#accordionSpoiler16">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -1059,8 +1059,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
+  "dateModified": "2024-08-06",
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 8b979f5..fd076e9 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -300,8 +300,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
+  "dateModified": "2024-08-06",
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index d4a3c9a..39f1b38 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -267,8 +267,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
+  "dateModified": "2024-08-06",
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor/AMI-setup.html b/instructor/AMI-setup.html
index a01c8a7..3182c54 100644
--- a/instructor/AMI-setup.html
+++ b/instructor/AMI-setup.html
@@ -527,7 +527,7 @@ <h3 class="callout-title">Warning<a class="anchor" aria-label="anchor" href="#wa
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 878cc8e..ecf35cc 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -296,7 +296,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 9622502..3d4d4d0 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -348,7 +348,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor/faq.html b/instructor/faq.html
index 4f96009..16bdd65 100644
--- a/instructor/faq.html
+++ b/instructor/faq.html
@@ -470,7 +470,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2024-07-13",
-  "datePublished": "2024-07-30"
+  "datePublished": "2024-08-06"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 3deeb40..6433847 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -398,7 +398,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Windows should
@@ -478,7 +478,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Mac OS X
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Mac should
@@ -500,7 +500,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Linux should
@@ -620,7 +620,7 @@ <h3 class="accordion-header" id="headingSpoiler4">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler4" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler4" aria-labelledby="headingSpoiler4">
+<div id="collapseSpoiler4" class="accordion-collapse collapse" aria-labelledby="headingSpoiler4" data-bs-parent="#accordionSpoiler4">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb1">
@@ -643,7 +643,7 @@ <h3 class="accordion-header" id="headingSpoiler5">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler5" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler5" aria-labelledby="headingSpoiler5">
+<div id="collapseSpoiler5" class="accordion-collapse collapse" aria-labelledby="headingSpoiler5" data-bs-parent="#accordionSpoiler5">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb2">
@@ -669,7 +669,7 @@ <h3 class="accordion-header" id="headingSpoiler6">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler6" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler6" aria-labelledby="headingSpoiler6">
+<div id="collapseSpoiler6" class="accordion-collapse collapse" aria-labelledby="headingSpoiler6" data-bs-parent="#accordionSpoiler6">
 <div class="accordion-body">
 <p>To install FastQC, type:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -689,7 +689,7 @@ <h3 class="accordion-header" id="headingSpoiler7">
   FastQC Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler7" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler7" aria-labelledby="headingSpoiler7">
+<div id="collapseSpoiler7" class="accordion-collapse collapse" aria-labelledby="headingSpoiler7" data-bs-parent="#accordionSpoiler7">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -735,7 +735,7 @@ <h3 class="accordion-header" id="headingSpoiler8">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler8" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler8" aria-labelledby="headingSpoiler8">
+<div id="collapseSpoiler8" class="accordion-collapse collapse" aria-labelledby="headingSpoiler8" data-bs-parent="#accordionSpoiler8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -754,7 +754,7 @@ <h3 class="accordion-header" id="headingSpoiler9">
   Trimmomatic Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler9" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler9" aria-labelledby="headingSpoiler9">
+<div id="collapseSpoiler9" class="accordion-collapse collapse" aria-labelledby="headingSpoiler9" data-bs-parent="#accordionSpoiler9">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -793,7 +793,7 @@ <h3 class="accordion-header" id="headingSpoiler10">
   Simplify the Invocation, or to Test your installation if you installed with miniconda3:
   </h3>
 </button>
-<div id="collapseSpoiler10" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler10" aria-labelledby="headingSpoiler10">
+<div id="collapseSpoiler10" class="accordion-collapse collapse" aria-labelledby="headingSpoiler10" data-bs-parent="#accordionSpoiler10">
 <div class="accordion-body">
 <p>To simplify the invocation you could also create a script in the
 ~/bin folder:</p>
@@ -825,7 +825,7 @@ <h3 class="accordion-header" id="headingSpoiler11">
   MacOS
   </h3>
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+<div id="collapseSpoiler11" class="accordion-collapse collapse" aria-labelledby="headingSpoiler11" data-bs-parent="#accordionSpoiler11">
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 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -844,7 +844,7 @@ <h3 class="accordion-header" id="headingSpoiler12">
   BWA Source Code Installation
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 </button>
-<div id="collapseSpoiler12" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler12" aria-labelledby="headingSpoiler12">
+<div id="collapseSpoiler12" class="accordion-collapse collapse" aria-labelledby="headingSpoiler12" data-bs-parent="#accordionSpoiler12">
 <div class="accordion-body">
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@@ -879,7 +879,7 @@ <h3 class="accordion-header" id="headingSpoiler13">
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 </button>
-<div id="collapseSpoiler13" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler13" aria-labelledby="headingSpoiler13">
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 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -914,7 +914,7 @@ <h3 class="accordion-header" id="headingSpoiler14">
   SAMtools Source Code Installation
   </h3>
 </button>
-<div id="collapseSpoiler14" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler14" aria-labelledby="headingSpoiler14">
+<div id="collapseSpoiler14" class="accordion-collapse collapse" aria-labelledby="headingSpoiler14" data-bs-parent="#accordionSpoiler14">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
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 </button>
-<div id="collapseSpoiler15" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler15" aria-labelledby="headingSpoiler15">
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 </button>
-<div id="collapseSpoiler16" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler16" aria-labelledby="headingSpoiler16">
+<div id="collapseSpoiler16" class="accordion-collapse collapse" aria-labelledby="headingSpoiler16" data-bs-parent="#accordionSpoiler16">
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@@ -1058,8 +1058,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
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   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
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diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 27bd076..f609d55 100644
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@@ -294,8 +294,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
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   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
+  "dateModified": "2024-08-06",
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 }
 
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index f2b67e6..0efcbef 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -254,8 +254,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
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 }
 
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diff --git a/instructor/reference.html b/instructor/reference.html
index 3c92586..535ea4b 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -289,7 +289,7 @@ <h1>Glossary</h1>
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   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-07-30"
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diff --git a/instructor/teaching_demos.html b/instructor/teaching_demos.html
index e0ca918..ed3a486 100644
--- a/instructor/teaching_demos.html
+++ b/instructor/teaching_demos.html
@@ -344,7 +344,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
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   "dateCreated": "2015-06-03",
   "dateModified": "2023-10-02",
-  "datePublished": "2024-07-30"
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diff --git a/pkgdown.yml b/pkgdown.yml
index d72d554..d846e46 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.0
 pkgdown_sha: ~
 articles: {}
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+last_built: 2024-08-06T00:18Z
diff --git a/profiles.html b/profiles.html
index aab2a24..bd49bd8 100644
--- a/profiles.html
+++ b/profiles.html
@@ -260,8 +260,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-07-30",
-  "datePublished": "2024-07-30"
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diff --git a/reference.html b/reference.html
index 35fef8b..3497703 100644
--- a/reference.html
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   "dateCreated": "2015-06-03",
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index 0e1f72e..c34b878 100644
--- a/teaching_demos.html
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@@ -348,7 +348,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
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