diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 9ec72970e..99755de24 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -14,7 +14,7 @@ examples, but the general format for a new term should be like this: ```json { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-.-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-.-0.0.1", "description": "", "anyOf": [ { diff --git a/README.md b/README.md index de884e256..7f317fd72 100644 --- a/README.md +++ b/README.md @@ -16,7 +16,7 @@ that are valid JSON Schema, such as the following: ``` { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.specimenID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.specimenID-0.0.1", "description": "Identifying string linked to a particular sample or specimen", "type": "string" } diff --git a/schemas/testschema.json b/schemas/testschema.json index 15d381875..081da1cc2 100644 --- a/schemas/testschema.json +++ b/schemas/testschema.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id":"sage.annotations-testschema.json-0.0.2", + "$id":"https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-testschema.json-0.0.3", "properties": { "resourceType": { "$ref": "sage.annotations-sageCommunity.resourceType-0.0.1" diff --git a/term-templates/template-boolean.json b/term-templates/template-boolean.json index 7293c233f..ac6ebb243 100644 --- a/term-templates/template-boolean.json +++ b/term-templates/template-boolean.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-.-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-.-0.0.1", "description": "", "type": "boolean" } diff --git a/term-templates/template-enum.json b/term-templates/template-enum.json index 97fe84293..4fe3e315b 100644 --- a/term-templates/template-enum.json +++ b/term-templates/template-enum.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-.-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-.-0.0.1", "description": "", "anyOf": [ { diff --git a/term-templates/template-number.json b/term-templates/template-number.json index 1a6f87ca5..2aa922e18 100644 --- a/term-templates/template-number.json +++ b/term-templates/template-number.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-.-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-.-0.0.1", "description": "", "type": "number" } diff --git a/term-templates/template-string.json b/term-templates/template-string.json index a9de7c790..68da47cec 100644 --- a/term-templates/template-string.json +++ b/term-templates/template-string.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-.-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-.-0.0.1", "description": "", "type": "string", "minLength": 1, diff --git a/terms/PsychENCODESpecific/grant.json b/terms/PsychENCODESpecific/grant.json index 979035811..924083bce 100644 --- a/terms/PsychENCODESpecific/grant.json +++ b/terms/PsychENCODESpecific/grant.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id":"sage.annotations-PsychENCODESpecific.grant-0.0.1", + "$id":"https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-PsychENCODESpecific.grant-0.0.2", "description": "Grant number including activity code, institute code, and serial number (e.g. U01MH103392)", "type": "string", "anyOf": [ diff --git a/terms/PsychENCODESpecific/study.json b/terms/PsychENCODESpecific/study.json index 2cd58b0a2..57863e4ac 100644 --- a/terms/PsychENCODESpecific/study.json +++ b/terms/PsychENCODESpecific/study.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id":"sage.annotations-PsychENCODESpecific.study-0.0.4", + "$id":"https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-PsychENCODESpecific.study-0.0.5", "description": "Study", "type": "string", "anyOf": [ diff --git a/terms/analysis/alignmentMethod.json b/terms/analysis/alignmentMethod.json index 00775602e..40e4d8217 100644 --- a/terms/analysis/alignmentMethod.json +++ b/terms/analysis/alignmentMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.alignmentMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.alignmentMethod-0.0.2", "description": "DNA or RNA sequence alignment method", + "type": "string", "anyOf": [ { "const": "Burrows-Wheeler technique", diff --git a/terms/analysis/analysisType.json b/terms/analysis/analysisType.json index 039c998e6..aa1ed4db0 100644 --- a/terms/analysis/analysisType.json +++ b/terms/analysis/analysisType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.analysisType-0.0.8", - "description": "", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.analysisType-0.0.9", + "description": "Type of analysis", + "type": "string", "anyOf": [ { "const": "ANOVA", diff --git a/terms/analysis/assemblyMethod.json b/terms/analysis/assemblyMethod.json index 737e98684..e841eee47 100644 --- a/terms/analysis/assemblyMethod.json +++ b/terms/analysis/assemblyMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.assemblyMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.assemblyMethod-0.0.2", "description": "Algorithm used to build a reference genome from short read sequencing data.", + "type": "string", "anyOf": [ { "const": "Velvet", diff --git a/terms/analysis/batchEffectCorrectionMethod.json b/terms/analysis/batchEffectCorrectionMethod.json index 2023f8878..443b626be 100644 --- a/terms/analysis/batchEffectCorrectionMethod.json +++ b/terms/analysis/batchEffectCorrectionMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.batchEffectCorrectionMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.batchEffectCorrectionMethod-0.0.2", "description": "Methods for identifying or correcting potential confounding variables in regression analyses.", + "type": "string", "anyOf": [ { "const": "COMBAT", diff --git a/terms/analysis/clusteringMethod.json b/terms/analysis/clusteringMethod.json index 94f343a32..4286b09b8 100644 --- a/terms/analysis/clusteringMethod.json +++ b/terms/analysis/clusteringMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.clusteringMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.clusteringMethod-0.0.2", "description": "A method to identify groups of similar variables based on their data distribution.", + "type": "string", "anyOf": [ { "const": "hierarchical clustering", diff --git a/terms/analysis/differentialExpressionMethod.json b/terms/analysis/differentialExpressionMethod.json index 75d61f0c4..58e846eb9 100644 --- a/terms/analysis/differentialExpressionMethod.json +++ b/terms/analysis/differentialExpressionMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.differentialExpressionMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.differentialExpressionMethod-0.0.2", "description": "Method used to test for differentially expressed genes or isoforms.", + "type": "string", "anyOf": [ { "const": "limma", diff --git a/terms/analysis/enrichmentMethod.json b/terms/analysis/enrichmentMethod.json index 5d80ff5da..c7d72028b 100644 --- a/terms/analysis/enrichmentMethod.json +++ b/terms/analysis/enrichmentMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.enrichmentMethod-0.0.1", - "description": "", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.enrichmentMethod-0.0.2", + "description": "Enrichment method.", + "type": "string", "anyOf": [ { "const": "Fisher's exact test", diff --git a/terms/analysis/fdr.json b/terms/analysis/fdr.json index 4d15d9ddc..faaca80e4 100644 --- a/terms/analysis/fdr.json +++ b/terms/analysis/fdr.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.fdr-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.fdr-0.0.2", "type": "number", "description": "False discovery rate" } diff --git a/terms/analysis/multipleTestingAdjustmentMethod.json b/terms/analysis/multipleTestingAdjustmentMethod.json index 7737162e2..d291723e9 100644 --- a/terms/analysis/multipleTestingAdjustmentMethod.json +++ b/terms/analysis/multipleTestingAdjustmentMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.multipleTestingAdjustmentMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.multipleTestingAdjustmentMethod-0.0.2", "description": "Method used to control either family wise error rate, false discovery rate, or other measures of burden of false positives and false negatives when performing multiple statistical tests.", + "type": "string", "anyOf": [ { "const": "Benjamini Hochberg", diff --git a/terms/analysis/peakCallingMethod.json b/terms/analysis/peakCallingMethod.json index 3c20a7820..d291a5269 100644 --- a/terms/analysis/peakCallingMethod.json +++ b/terms/analysis/peakCallingMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.peakCallingMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.peakCallingMethod-0.0.2", "description": "The algorithm used to identify protein-binding regions in a genome sequence from the data generated from a ChIP-sequencing or ChIP-chip experiment.", + "type": "string", "anyOf": [ { "const": "MACS", diff --git a/terms/analysis/somaticMutationCallingMethod.json b/terms/analysis/somaticMutationCallingMethod.json index a96008cdf..6ee141e48 100644 --- a/terms/analysis/somaticMutationCallingMethod.json +++ b/terms/analysis/somaticMutationCallingMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.somaticMutationCallingMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.somaticMutationCallingMethod-0.0.2", "description": "Algorithm to call somatic mutations.", + "type": "string", "anyOf": [ { "const": "VarDict", diff --git a/terms/analysis/statisticalNetworkReconstructionMethod.json b/terms/analysis/statisticalNetworkReconstructionMethod.json index b8ea71255..b9a45a037 100644 --- a/terms/analysis/statisticalNetworkReconstructionMethod.json +++ b/terms/analysis/statisticalNetworkReconstructionMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.statisticalNetworkReconstructionMethod-0.0.1", - "description": "", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.statisticalNetworkReconstructionMethod-0.0.2", + "description": "Statistical network reconstruction method.", + "type": "string", "anyOf": [ { "const": "Weighted correlation network analysis", diff --git a/terms/analysis/supervisedLearningMethod.json b/terms/analysis/supervisedLearningMethod.json index 87ada261d..840c725dd 100644 --- a/terms/analysis/supervisedLearningMethod.json +++ b/terms/analysis/supervisedLearningMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.supervisedLearningMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.supervisedLearningMethod-0.0.2", "description": "An algorithm to fit a model to make predictions of future outcomes based past data.", + "type": "string", "anyOf": [ { "const": "penalized regression", diff --git a/terms/analysis/transcriptQuantificationMethod.json b/terms/analysis/transcriptQuantificationMethod.json index f6c2258dd..910a225b4 100644 --- a/terms/analysis/transcriptQuantificationMethod.json +++ b/terms/analysis/transcriptQuantificationMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.transcriptQuantificationMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.transcriptQuantificationMethod-0.0.2", "description": "Method for quantifying abundance of transcript expression.", + "type": "string", "anyOf": [ { "const": "kallisto", diff --git a/terms/analysis/validationMethod.json b/terms/analysis/validationMethod.json index 9511ae917..5463158e5 100644 --- a/terms/analysis/validationMethod.json +++ b/terms/analysis/validationMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.validationMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.validationMethod-0.0.2", "description": "Method to test targeted sequence level hypothesis.", + "type": "string", "anyOf": [ { "const": "CRISPR-Cas9", diff --git a/terms/analysis/visualizationMethod.json b/terms/analysis/visualizationMethod.json index 9e5cc463e..be2e15db1 100644 --- a/terms/analysis/visualizationMethod.json +++ b/terms/analysis/visualizationMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-analysis.visualizationMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-analysis.visualizationMethod-0.0.2", "description": "The format in which data is visually displayed.", + "type": "string", "anyOf": [ { "const": "scatter plot", diff --git a/terms/array/channel.json b/terms/array/channel.json index 903dc43c0..cb594cf7a 100644 --- a/terms/array/channel.json +++ b/terms/array/channel.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-array.channel-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-array.channel-0.0.2", "description": "Fluorescent color labeling for an array", + "type": "string", "anyOf": [ { "const": "Cy5", diff --git a/terms/batch/arrayBatch.json b/terms/batch/arrayBatch.json index 5a0d545ed..772b5f3be 100644 --- a/terms/batch/arrayBatch.json +++ b/terms/batch/arrayBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.arrayBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.arrayBatch-0.0.2", "type": "string", "description": "The hybridization batch the sample was in" } diff --git a/terms/batch/batch.json b/terms/batch/batch.json index 23ef0a196..1ca73de64 100644 --- a/terms/batch/batch.json +++ b/terms/batch/batch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-batch.batch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.batch-0.0.2", "description": "Batch specimen was processed in", "type": "string" } diff --git a/terms/batch/batchChannel.json b/terms/batch/batchChannel.json index 5a01e36bf..34ca5d751 100644 --- a/terms/batch/batchChannel.json +++ b/terms/batch/batchChannel.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.batchChannel-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.batchChannel-0.0.2", "type": "string", "description": "TMT channel the sample is labeled with" } diff --git a/terms/batch/dnaBatch.json b/terms/batch/dnaBatch.json index 6fc708e0d..1cc6b829e 100644 --- a/terms/batch/dnaBatch.json +++ b/terms/batch/dnaBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.dnaBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.dnaBatch-0.0.2", "type": "string", "description": "DNA isolation batch" } diff --git a/terms/batch/libraryBatch.json b/terms/batch/libraryBatch.json index 77e435686..e63322aa7 100644 --- a/terms/batch/libraryBatch.json +++ b/terms/batch/libraryBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.libraryBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.libraryBatch-0.0.2", "type": "string", "description": "Batch library was prepared in" } diff --git a/terms/batch/nanostringBatch.json b/terms/batch/nanostringBatch.json index de7ff3db4..17f9697cd 100644 --- a/terms/batch/nanostringBatch.json +++ b/terms/batch/nanostringBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.nanostringBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.nanostringBatch-0.0.2", "type": "string", "description": "The batch of samples run on a nanostring panel. Twelve samples can be processed together at once on a machine." } diff --git a/terms/batch/rnaBatch.json b/terms/batch/rnaBatch.json index d2d704e2f..0cdeb36db 100644 --- a/terms/batch/rnaBatch.json +++ b/terms/batch/rnaBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.rnaBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.rnaBatch-0.0.2", "type": "string", "description": "Batch in which RNA sample was isolated" } diff --git a/terms/batch/sequencingBatch.json b/terms/batch/sequencingBatch.json index ae3cedd4f..768634d05 100644 --- a/terms/batch/sequencingBatch.json +++ b/terms/batch/sequencingBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.sequencingBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.sequencingBatch-0.0.2", "type": "string", "description": "Batch library was sequenced in" } diff --git a/terms/batch/transposaseBatch.json b/terms/batch/transposaseBatch.json index 48749024d..1120709f0 100644 --- a/terms/batch/transposaseBatch.json +++ b/terms/batch/transposaseBatch.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-batch.transposaseBatch-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-batch.transposaseBatch-0.0.2", "type": "string", "description": "Transposition reaction batch" } diff --git a/terms/cancer/cellSubType.json b/terms/cancer/cellSubType.json index d7557f2a6..b25329807 100644 --- a/terms/cancer/cellSubType.json +++ b/terms/cancer/cellSubType.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.cellSubType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.cellSubType-0.0.2", "description": "This term is to be used when cell type is not specific enough, such as certain classes of T cells", "type": "string" } diff --git a/terms/cancer/experimentalCondition.json b/terms/cancer/experimentalCondition.json index 8ca6292a4..43ab926ee 100644 --- a/terms/cancer/experimentalCondition.json +++ b/terms/cancer/experimentalCondition.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.experimentalCondition-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.experimentalCondition-0.0.2", "description": "This describes the condition under which the data were collected, designed to be free form, extra things that do not fit in pre-defined terms", "type": "string" } diff --git a/terms/cancer/experimentalTimePoint.json b/terms/cancer/experimentalTimePoint.json index 51c133deb..ec683c580 100644 --- a/terms/cancer/experimentalTimePoint.json +++ b/terms/cancer/experimentalTimePoint.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.experimentalTimePoint-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.experimentalTimePoint-0.0.2", "description": "Number describing time point at which data was collected", "type": "string" } diff --git a/terms/cancer/genePerturbationTechnology.json b/terms/cancer/genePerturbationTechnology.json index c35325607..03bc9882e 100644 --- a/terms/cancer/genePerturbationTechnology.json +++ b/terms/cancer/genePerturbationTechnology.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.genePerturbationTechnology-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.genePerturbationTechnology-0.0.2", "description": "Technology used to perform gene perturbation", + "type": "string", "anyOf": [ { "const": "RNAi", diff --git a/terms/cancer/genePerturbationType.json b/terms/cancer/genePerturbationType.json index 4dc85c181..47d042122 100644 --- a/terms/cancer/genePerturbationType.json +++ b/terms/cancer/genePerturbationType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.genePerturbationType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.genePerturbationType-0.0.2", "description": "Specific way in which a single gene was perturbed in a sample", + "type": "string", "anyOf": [ { "const": "overexpression", diff --git a/terms/cancer/genePerturbed.json b/terms/cancer/genePerturbed.json index 46e92857e..6f04df32a 100644 --- a/terms/cancer/genePerturbed.json +++ b/terms/cancer/genePerturbed.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.genePerturbed-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.genePerturbed-0.0.2", "description": "In the case of gene modulation, this describes the gene or genes that were modulated", "type": "string" } diff --git a/terms/cancer/timePointUnit.json b/terms/cancer/timePointUnit.json index 5c3721f22..6050b56d1 100644 --- a/terms/cancer/timePointUnit.json +++ b/terms/cancer/timePointUnit.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.timePointUnit-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.timePointUnit-0.0.2", "description": "For timed experiments this represents the unit of time measured", + "type": "string", "anyOf": [ { "const": "hours", diff --git a/terms/cancer/transplantationDonorTissue.json b/terms/cancer/transplantationDonorTissue.json index 1b3a18914..4f038d7ca 100644 --- a/terms/cancer/transplantationDonorTissue.json +++ b/terms/cancer/transplantationDonorTissue.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.transplantationDonorTissue-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.transplantationDonorTissue-0.0.2", "description": "", "type": "string" } diff --git a/terms/cancer/transplantationRecipientSpecies.json b/terms/cancer/transplantationRecipientSpecies.json index 3d214966a..350ee8e1e 100644 --- a/terms/cancer/transplantationRecipientSpecies.json +++ b/terms/cancer/transplantationRecipientSpecies.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.transplantationRecipientSpecies-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.transplantationRecipientSpecies-0.0.2", "description": "Species into which donor tissue was grown", + "type": "string", "anyOf": [ { "const": "Human", diff --git a/terms/cancer/transplantationRecipientTissue.json b/terms/cancer/transplantationRecipientTissue.json index a4c53f06e..9d3c5766b 100644 --- a/terms/cancer/transplantationRecipientTissue.json +++ b/terms/cancer/transplantationRecipientTissue.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.transplantationRecipientTissue-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.transplantationRecipientTissue-0.0.2", "description": "In the case of a transplate, this describes the transplant destination", "type": "string" } diff --git a/terms/cancer/transplantationType.json b/terms/cancer/transplantationType.json index 747f188b3..037040f53 100644 --- a/terms/cancer/transplantationType.json +++ b/terms/cancer/transplantationType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.transplantationType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.transplantationType-0.0.2", "description": "Type of transplantation involved in the experiment, derived from MESH", + "type": "string", "anyOf": [ { "const": "allograft", diff --git a/terms/cancer/tumorType.json b/terms/cancer/tumorType.json index ad303514a..a098d36a9 100644 --- a/terms/cancer/tumorType.json +++ b/terms/cancer/tumorType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-cancer.tumorType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-cancer.tumorType-0.0.2", "description": "The type of cells that carcinoma arises from.", + "type": "string", "anyOf": [ { "const": "Cutaneous Neurofibroma", diff --git a/terms/chem/chemicalDataType.json b/terms/chem/chemicalDataType.json index afc120b05..919ad8392 100644 --- a/terms/chem/chemicalDataType.json +++ b/terms/chem/chemicalDataType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-chem.chemicalDataType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-chem.chemicalDataType-0.0.2", "description": "The type of chemical data in the dataset.", + "type": "string", "anyOf": [ { "const": "target", diff --git a/terms/chem/chemicalDatabase.json b/terms/chem/chemicalDatabase.json index 2fba6686f..4d85982ee 100644 --- a/terms/chem/chemicalDatabase.json +++ b/terms/chem/chemicalDatabase.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-chem.chemicalDatabase-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-chem.chemicalDatabase-0.0.2", "description": "The chemical database from which the data were obtained.", "type": "string" } diff --git a/terms/chem/chemicalStructure.json b/terms/chem/chemicalStructure.json index 39fa5833d..ab6466bca 100644 --- a/terms/chem/chemicalStructure.json +++ b/terms/chem/chemicalStructure.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-chem.chemicalStructure-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-chem.chemicalStructure-0.0.2", "description": "A linear representation of the chemical structure (SMILES, SMARTS, InChI, InChIKey, etc). Note the format using structureFormat.", "type": "string" } diff --git a/terms/chem/fingerprintType.json b/terms/chem/fingerprintType.json index 0340a7ed3..6554dd3b2 100644 --- a/terms/chem/fingerprintType.json +++ b/terms/chem/fingerprintType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-chem.fingerprintType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-chem.fingerprintType-0.0.2", "description": "The type of chemical fingerprint used.", + "type": "string", "anyOf": [ { "const": "standard", diff --git a/terms/chem/structureFormat.json b/terms/chem/structureFormat.json index a85853eb0..6ab63fa76 100644 --- a/terms/chem/structureFormat.json +++ b/terms/chem/structureFormat.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-chem.structureFormat-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-chem.structureFormat-0.0.2", "description": "The chemical structural representation used.", + "type": "string", "anyOf": [ { "const": "SMILES", diff --git a/terms/clinical/BMI.json b/terms/clinical/BMI.json index c1f442685..8bc6b50fe 100644 --- a/terms/clinical/BMI.json +++ b/terms/clinical/BMI.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.BMI-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.BMI-0.0.2", "type": "number", "description": "Body Mass Index" } diff --git a/terms/clinical/Braak.json b/terms/clinical/Braak.json index 7630af4ab..eef5dec08 100644 --- a/terms/clinical/Braak.json +++ b/terms/clinical/Braak.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.Braak-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.Braak-0.0.2", "type": "integer", "minimum": 0, "maximum": 6, diff --git a/terms/clinical/CDR.json b/terms/clinical/CDR.json index 9c88ed3df..5926b2500 100644 --- a/terms/clinical/CDR.json +++ b/terms/clinical/CDR.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.CDR-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.CDR-0.0.3", "type": "number", "description": "Clinical Dementia Rating" } diff --git a/terms/clinical/CERAD.json b/terms/clinical/CERAD.json index b7fdb98b5..782af8f3d 100644 --- a/terms/clinical/CERAD.json +++ b/terms/clinical/CERAD.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-clinical.CERAD-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.CERAD-0.0.2", "type": "integer", "minimum": 1, "maximum": 4, diff --git a/terms/clinical/IQ.json b/terms/clinical/IQ.json index a077828ae..b58440805 100644 --- a/terms/clinical/IQ.json +++ b/terms/clinical/IQ.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.IQ-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.IQ-0.0.2", "type": "integer", "description": "IQ" } diff --git a/terms/clinical/ageOnset.json b/terms/clinical/ageOnset.json index 057327c26..99710b857 100644 --- a/terms/clinical/ageOnset.json +++ b/terms/clinical/ageOnset.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.ageOnset-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.ageOnset-0.0.2", "type": "number", "description": "Age in years of the first symptoms" } diff --git a/terms/clinical/apoeGenotype.json b/terms/clinical/apoeGenotype.json index c4681845a..6d6a29cbc 100644 --- a/terms/clinical/apoeGenotype.json +++ b/terms/clinical/apoeGenotype.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-clinical.apoeGenotype-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.apoeGenotype-0.0.2", "description": "Apolipoprotein E genotype", + "type": "string", "anyOf": [ { "const": "22", diff --git a/terms/clinical/causeDeath.json b/terms/clinical/causeDeath.json index bc6075e4d..e3fc0befd 100644 --- a/terms/clinical/causeDeath.json +++ b/terms/clinical/causeDeath.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.causeDeath-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.causeDeath-0.0.2", "type": "string", "description": "The specific injury or disease that lead to death" } diff --git a/terms/clinical/dementia.json b/terms/clinical/dementia.json index 8e370cc79..1cc556eb3 100644 --- a/terms/clinical/dementia.json +++ b/terms/clinical/dementia.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.dementia-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.dementia-0.0.2", "type": "boolean", "description": "Is dementia present" } diff --git a/terms/clinical/familyHistory.json b/terms/clinical/familyHistory.json index 5d5e599ba..f062da90b 100644 --- a/terms/clinical/familyHistory.json +++ b/terms/clinical/familyHistory.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.familyHistory-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.familyHistory-0.0.2", "type": "boolean", "description": "Is there a family history of the disorder/disease" } diff --git a/terms/clinical/genotype.json b/terms/clinical/genotype.json index 7d475292b..a21b311a3 100644 --- a/terms/clinical/genotype.json +++ b/terms/clinical/genotype.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.genotype-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.genotype-0.0.2", "type": "string", "description": "Genotype common name" } diff --git a/terms/clinical/genotypeBackground.json b/terms/clinical/genotypeBackground.json index 3b35f5f69..4b7b2e467 100644 --- a/terms/clinical/genotypeBackground.json +++ b/terms/clinical/genotypeBackground.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.genotypeBackground-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.genotypeBackground-0.0.2", "type": "string", "description": "Genetic background of the model" } diff --git a/terms/clinical/genotypeInferredAncestry.json b/terms/clinical/genotypeInferredAncestry.json index de5a1a2aa..94329817d 100644 --- a/terms/clinical/genotypeInferredAncestry.json +++ b/terms/clinical/genotypeInferredAncestry.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.genotypeInferredAncestry-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.genotypeInferredAncestry-0.0.2", "type": "string", "description": "Ancestry inferred from the genotype" } diff --git a/terms/clinical/litter.json b/terms/clinical/litter.json index fbf55dd49..f1e2b63e1 100644 --- a/terms/clinical/litter.json +++ b/terms/clinical/litter.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.litter-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.litter-0.0.2", "type": "string", "description": "Animal litter" } diff --git a/terms/clinical/mannerDeath.json b/terms/clinical/mannerDeath.json index 94dbe7ba0..e5603f80a 100644 --- a/terms/clinical/mannerDeath.json +++ b/terms/clinical/mannerDeath.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.mannerDeath-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.mannerDeath-0.0.2", "type": "string", "description": "The determination of how the injury or disease lead to death", "anyOf": [ diff --git a/terms/clinical/matingID.json b/terms/clinical/matingID.json index bb3645724..674345bd6 100644 --- a/terms/clinical/matingID.json +++ b/terms/clinical/matingID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.matingID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.matingID-0.0.2", "type": "string", "description": "Identifies the animals that were mated to produce the animal in question" } diff --git a/terms/clinical/medRecordTox.json b/terms/clinical/medRecordTox.json index 0a4dee83a..9c1395eb3 100644 --- a/terms/clinical/medRecordTox.json +++ b/terms/clinical/medRecordTox.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.medRecordTox-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.medRecordTox-0.0.3", "type": "boolean", "description": "Is there a medical record toxicology report" } diff --git a/terms/clinical/neuropathDescription.json b/terms/clinical/neuropathDescription.json index c3ebec12e..164596521 100644 --- a/terms/clinical/neuropathDescription.json +++ b/terms/clinical/neuropathDescription.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.neuropathDescription-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.neuropathDescription-0.0.2", "type": "string", "description": "Description of neuropathology" } diff --git a/terms/clinical/postmortemTox.json b/terms/clinical/postmortemTox.json index e072381c0..671582022 100644 --- a/terms/clinical/postmortemTox.json +++ b/terms/clinical/postmortemTox.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.postmortemTox-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.postmortemTox-0.0.2", "type": "boolean", "description": "Were toxicology tests performed on post mortem tissue" } diff --git a/terms/clinical/postmortemToxSource.json b/terms/clinical/postmortemToxSource.json index 35cf3c0b5..d38770d08 100644 --- a/terms/clinical/postmortemToxSource.json +++ b/terms/clinical/postmortemToxSource.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.postmortemToxSource-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.postmortemToxSource-0.0.2", "type": "string", "description": "Tissues used for post mortem toxicology tests" } diff --git a/terms/clinical/room.json b/terms/clinical/room.json index 2730d1db2..5d7552695 100644 --- a/terms/clinical/room.json +++ b/terms/clinical/room.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.room-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.room-0.0.2", "type": "string", "description": "Room the animal was housed in" } diff --git a/terms/clinical/sexChromosome.json b/terms/clinical/sexChromosome.json index 56067d345..c5cc7dcc2 100644 --- a/terms/clinical/sexChromosome.json +++ b/terms/clinical/sexChromosome.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-clinical.sexChromosome-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-clinical.sexChromosome-0.0.2", "type": "string", "description": "Sex identified by SNP genotype (e.g XX, XY)" } diff --git a/terms/compoundScreen/compoundDose.json b/terms/compoundScreen/compoundDose.json index 605b3165c..c9d010f81 100644 --- a/terms/compoundScreen/compoundDose.json +++ b/terms/compoundScreen/compoundDose.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.compoundDose-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.compoundDose-0.0.2", "description": "", "type": "number" } diff --git a/terms/compoundScreen/compoundDoseRange.json b/terms/compoundScreen/compoundDoseRange.json index 857ce8520..da28fe86c 100644 --- a/terms/compoundScreen/compoundDoseRange.json +++ b/terms/compoundScreen/compoundDoseRange.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.compoundDoseRange-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.compoundDoseRange-0.0.2", "description": "The minimum and maximum values of a treatment range; e.g. 1-25", "type": "string" } diff --git a/terms/compoundScreen/compoundDoseUnit.json b/terms/compoundScreen/compoundDoseUnit.json index a562ee34d..6ef9a3b38 100644 --- a/terms/compoundScreen/compoundDoseUnit.json +++ b/terms/compoundScreen/compoundDoseUnit.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.compoundDoseUnit-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.compoundDoseUnit-0.0.2", "description": "", "type": "string" } diff --git a/terms/compoundScreen/compoundName.json b/terms/compoundScreen/compoundName.json index fea63472c..b84dcb1c2 100644 --- a/terms/compoundScreen/compoundName.json +++ b/terms/compoundScreen/compoundName.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.compoundName-0.0.1", - "description": "", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.compoundName-0.0.2", + "description": "Name of the compound.", + "type": "string", "anyOf": [ { "const": "PD0325901", diff --git a/terms/compoundScreen/drugScreenType.json b/terms/compoundScreen/drugScreenType.json index ceb7a02a1..5c803667c 100644 --- a/terms/compoundScreen/drugScreenType.json +++ b/terms/compoundScreen/drugScreenType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.drugScreenType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.drugScreenType-0.0.2", "description": "String describing general class of drug screen", + "type": "string", "anyOf": [ { "const": "singleMolecule", diff --git a/terms/compoundScreen/secondCompoundDose.json b/terms/compoundScreen/secondCompoundDose.json index 01a150ed4..ce1902398 100644 --- a/terms/compoundScreen/secondCompoundDose.json +++ b/terms/compoundScreen/secondCompoundDose.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.secondCompoundDose-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.secondCompoundDose-0.0.2", "description": "", "type": "number" } diff --git a/terms/compoundScreen/secondCompoundDoseUnit.json b/terms/compoundScreen/secondCompoundDoseUnit.json index 2532dd24e..d74e7cb02 100644 --- a/terms/compoundScreen/secondCompoundDoseUnit.json +++ b/terms/compoundScreen/secondCompoundDoseUnit.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.secondCompoundDoseUnit-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.secondCompoundDoseUnit-0.0.2", "description": "", "type": "string" } diff --git a/terms/compoundScreen/secondCompoundName.json b/terms/compoundScreen/secondCompoundName.json index 7f22eb5c5..8a7035dbe 100644 --- a/terms/compoundScreen/secondCompoundName.json +++ b/terms/compoundScreen/secondCompoundName.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-compoundScreen.secondCompoundName-0.0.1", - "description": "", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-compoundScreen.secondCompoundName-0.0.2", + "description": "Name of the compound.", + "type": "string", "anyOf": [ { "const": "PD0325901", diff --git a/terms/curatedData/curatedDataSource.json b/terms/curatedData/curatedDataSource.json index b71eeb979..b6cbeb169 100644 --- a/terms/curatedData/curatedDataSource.json +++ b/terms/curatedData/curatedDataSource.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-curatedData.curatedDataSource-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-curatedData.curatedDataSource-0.0.2", "description": "The database or curator of the curated data.", "type": "string" } diff --git a/terms/curatedData/curatedDataType.json b/terms/curatedData/curatedDataType.json index ce1071c73..463944608 100644 --- a/terms/curatedData/curatedDataType.json +++ b/terms/curatedData/curatedDataType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-curatedData.curatedDataType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-curatedData.curatedDataType-0.0.2", "description": "The type of information being curated.", + "type": "string", "anyOf": [ { "const": "reference sequence", diff --git a/terms/curatedData/referenceSet.json b/terms/curatedData/referenceSet.json index d974d468e..803c073dc 100644 --- a/terms/curatedData/referenceSet.json +++ b/terms/curatedData/referenceSet.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-curatedData.referenceSet-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-curatedData.referenceSet-0.0.3", "description": "A set of references (e.g., canonical assembled contigs) which defines a common coordinate space for comparing reference-aligned experimental data.", + "type": "string", "anyOf": [ { "const": "1000 Genomes phase 3", diff --git a/terms/demographics/ageDays.json b/terms/demographics/ageDays.json index 4ff216482..0bb6ba100 100644 --- a/terms/demographics/ageDays.json +++ b/terms/demographics/ageDays.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.ageDays-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.ageDays-0.0.2", "type": "number", "description": "Average age in days of the Drosophila individuals in the sample" } diff --git a/terms/demographics/ageDeath.json b/terms/demographics/ageDeath.json index ef25c9086..6eec63beb 100644 --- a/terms/demographics/ageDeath.json +++ b/terms/demographics/ageDeath.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.ageDeath-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.ageDeath-0.0.2", "type": "number", "description": "Age of death" } diff --git a/terms/demographics/ageDeathUnits.json b/terms/demographics/ageDeathUnits.json index 4bf520529..8ec60f7b2 100644 --- a/terms/demographics/ageDeathUnits.json +++ b/terms/demographics/ageDeathUnits.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.ageDeathUnits-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.ageDeathUnits-0.0.4", "type": "string", "description": "The death age unit of measure", "anyOf": [ diff --git a/terms/demographics/dateBirth.json b/terms/demographics/dateBirth.json index c14e1b556..9c6cb9494 100644 --- a/terms/demographics/dateBirth.json +++ b/terms/demographics/dateBirth.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.dateBirth-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.dateBirth-0.0.2", "type": "string", "description": "Individual date of birth" } diff --git a/terms/demographics/dateDeath.json b/terms/demographics/dateDeath.json index bddc7e2b6..53207a741 100644 --- a/terms/demographics/dateDeath.json +++ b/terms/demographics/dateDeath.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.dateDeath-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.dateDeath-0.0.2", "type": "string", "description": "Individual date of death" } diff --git a/terms/demographics/ethnicity.json b/terms/demographics/ethnicity.json index 7179724d3..6b6b9fb86 100644 --- a/terms/demographics/ethnicity.json +++ b/terms/demographics/ethnicity.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.ethnicity-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.ethnicity-0.0.2", "type": "string", "description": "Ethnicity of the donor" } diff --git a/terms/demographics/familialRelationship.json b/terms/demographics/familialRelationship.json index 5c44782ba..8cfc9f5bb 100644 --- a/terms/demographics/familialRelationship.json +++ b/terms/demographics/familialRelationship.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-demographics.familialRelationship-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.familialRelationship-0.0.3", "type": "string", "description": "Family relationship between individuals in the study", "anyOf": [ diff --git a/terms/demographics/race.json b/terms/demographics/race.json index b119527cd..e8ebd6927 100644 --- a/terms/demographics/race.json +++ b/terms/demographics/race.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.race-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.race-0.0.2", "type": "string", "description": "Race", "anyOf": [ diff --git a/terms/demographics/reportedGender.json b/terms/demographics/reportedGender.json index 0e74c5181..8c59e2195 100644 --- a/terms/demographics/reportedGender.json +++ b/terms/demographics/reportedGender.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.reportedGender-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.reportedGender-0.0.2", "type": "string", "description": "Gender as reported by the tissue bank", "anyOf": [ diff --git a/terms/demographics/yearsEducation.json b/terms/demographics/yearsEducation.json index 9335ce919..00a82dcee 100644 --- a/terms/demographics/yearsEducation.json +++ b/terms/demographics/yearsEducation.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-demographics.yearsEducation-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-demographics.yearsEducation-0.0.2", "type": "number", "description": "Years of education starting with kindergarten" } diff --git a/terms/dhart/caseNumber.json b/terms/dhart/caseNumber.json index bef36f2eb..dfdb669a7 100644 --- a/terms/dhart/caseNumber.json +++ b/terms/dhart/caseNumber.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-dhart.caseNumber-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-dhart.caseNumber-0.0.2", "description": "This is the case number from the virtual repository", "type": "string" } diff --git a/terms/dhart/collectionDate.json b/terms/dhart/collectionDate.json index 600729960..fc8f8323c 100644 --- a/terms/dhart/collectionDate.json +++ b/terms/dhart/collectionDate.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-dhart.collectionDate-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-dhart.collectionDate-0.0.2", "description": "The date when this was collected", "type": "string" } diff --git a/terms/dhart/projectNumber.json b/terms/dhart/projectNumber.json index 8584b562f..6969849e5 100644 --- a/terms/dhart/projectNumber.json +++ b/terms/dhart/projectNumber.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-dhart.projectNumber-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-dhart.projectNumber-0.0.2", "description": "There are four projects on going in the spore. This describes for which one the data was collected.", + "type": "string", "anyOf": [ { "const": "Project 1", diff --git a/terms/dhart/specimenQuantity.json b/terms/dhart/specimenQuantity.json index 05c2fd76e..b0f225fa5 100644 --- a/terms/dhart/specimenQuantity.json +++ b/terms/dhart/specimenQuantity.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-dhart.specimenQuantity-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-dhart.specimenQuantity-0.0.2", "description": "Currently unused, but could be used to describe how much specimen remains", "type": "string" } diff --git a/terms/dhart/studySite.json b/terms/dhart/studySite.json index cd31cdbcc..6cc8e4c78 100644 --- a/terms/dhart/studySite.json +++ b/terms/dhart/studySite.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-dhart.studySite-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-dhart.studySite-0.0.2", "description": "This describes the site where the specimen was collected", "type": "string" } diff --git a/terms/experimentalData/MRItype.json b/terms/experimentalData/MRItype.json index ecf890581..4e3937a61 100644 --- a/terms/experimentalData/MRItype.json +++ b/terms/experimentalData/MRItype.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.MRItype-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.MRItype-0.0.2", "description": "The type of MRI assay performed.", + "type": "string", "anyOf": [ { "const": "DTI", diff --git a/terms/experimentalData/SentrixID.json b/terms/experimentalData/SentrixID.json index b60c72b14..01771eaa2 100644 --- a/terms/experimentalData/SentrixID.json +++ b/terms/experimentalData/SentrixID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.SentrixID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.SentrixID-0.0.2", "description": "BeadChip ID in Illumina array-based assay", "type": "string" } diff --git a/terms/experimentalData/SentrixRowColumn.json b/terms/experimentalData/SentrixRowColumn.json index b7364b393..bde40d380 100644 --- a/terms/experimentalData/SentrixRowColumn.json +++ b/terms/experimentalData/SentrixRowColumn.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.SentrixRowColumn-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.SentrixRowColumn-0.0.2", "description": "Position of sample on BeadChip in Illumina array-based assay", "type": "string" } diff --git a/terms/experimentalData/TMTType.json b/terms/experimentalData/TMTType.json index 1fab8e585..98e2ff85d 100644 --- a/terms/experimentalData/TMTType.json +++ b/terms/experimentalData/TMTType.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.TMTType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.TMTType-0.0.2", "type": "string", "description": "Specifies how TMT reporter ions are quantified" } diff --git a/terms/experimentalData/ageAssessment.json b/terms/experimentalData/ageAssessment.json index d38d0e6b1..366168e76 100644 --- a/terms/experimentalData/ageAssessment.json +++ b/terms/experimentalData/ageAssessment.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.ageAssessment-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.ageAssessment-0.0.2", "description": "Age of clinical or behavioral assessment.", "type": "number" } diff --git a/terms/experimentalData/ageAssessmentUnits.json b/terms/experimentalData/ageAssessmentUnits.json index e4fb1715f..bc2598fde 100644 --- a/terms/experimentalData/ageAssessmentUnits.json +++ b/terms/experimentalData/ageAssessmentUnits.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.ageAssessmentUnits-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.ageAssessmentUnits-0.0.2", "description": "Age of assessment units.", + "type": "string", "anyOf": [ { "const": "days", diff --git a/terms/experimentalData/assay.json b/terms/experimentalData/assay.json index d45f42350..6e57da263 100644 --- a/terms/experimentalData/assay.json +++ b/terms/experimentalData/assay.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.assay-0.0.14", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.assay-0.0.15", "description": "The technology used to generate the data in this file", + "type": "string", "anyOf": [ { "const": "16SrRNAseq", diff --git a/terms/experimentalData/assayTarget.json b/terms/experimentalData/assayTarget.json index 0841c01f1..86375fd88 100644 --- a/terms/experimentalData/assayTarget.json +++ b/terms/experimentalData/assayTarget.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.assayTarget-0.0.5", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.assayTarget-0.0.6", "description": "", + "type": "string", "anyOf": [ { "const": "ARID1B", diff --git a/terms/experimentalData/batchSize.json b/terms/experimentalData/batchSize.json index 7c0f08272..8ab8e3088 100644 --- a/terms/experimentalData/batchSize.json +++ b/terms/experimentalData/batchSize.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.batchSize-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.batchSize-0.0.2", "description": "Size of batch", "type": "number" } diff --git a/terms/experimentalData/bindingDensity.json b/terms/experimentalData/bindingDensity.json index be367effc..dcbd8f750 100644 --- a/terms/experimentalData/bindingDensity.json +++ b/terms/experimentalData/bindingDensity.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.bindingDensity-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.bindingDensity-0.0.2", "type": "string", "description": "The number of optical features per square micron for each lane. (Definition is from https://www.nanostring.com/wp-content/uploads/2020/12/Gene_Expression_Data_Analysis_Guidelines.pdf)" } diff --git a/terms/experimentalData/bodyPart.json b/terms/experimentalData/bodyPart.json index 8a9e64b38..9703b8e38 100644 --- a/terms/experimentalData/bodyPart.json +++ b/terms/experimentalData/bodyPart.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.bodyPart-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.bodyPart-0.0.2", "description": "Named areas of the body.", + "type": "string", "anyOf": [ { "const": "head", diff --git a/terms/experimentalData/brainWeight.json b/terms/experimentalData/brainWeight.json index 3e2a914d0..0843105ed 100644 --- a/terms/experimentalData/brainWeight.json +++ b/terms/experimentalData/brainWeight.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.brainWeight-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.brainWeight-0.0.2", "type": "number", "description": "Weight of brain in grams" } diff --git a/terms/experimentalData/cellLine.json b/terms/experimentalData/cellLine.json index ef6adb5bb..07d0aeaec 100644 --- a/terms/experimentalData/cellLine.json +++ b/terms/experimentalData/cellLine.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.cellLine-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.cellLine-0.0.2", "description": "Identifying string linked to a particular cell line", "type": "string" } diff --git a/terms/experimentalData/cellLineSource.json b/terms/experimentalData/cellLineSource.json index a0170f062..74fe50e0a 100644 --- a/terms/experimentalData/cellLineSource.json +++ b/terms/experimentalData/cellLineSource.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.cellLineSource-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.cellLineSource-0.0.2", "description": "Identifying source of cell line, such as ATCC site", "type": "string" } diff --git a/terms/experimentalData/cellType.json b/terms/experimentalData/cellType.json index d37d9346f..ec2fce628 100644 --- a/terms/experimentalData/cellType.json +++ b/terms/experimentalData/cellType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.cellType-0.0.7", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.cellType-0.0.8", "description": "A cell type is a distinct morphological or functional form of cell.", + "type": "string", "anyOf": [ { "const": "A549", diff --git a/terms/experimentalData/chromosome.json b/terms/experimentalData/chromosome.json index fc5ea6ff7..3a73e297a 100644 --- a/terms/experimentalData/chromosome.json +++ b/terms/experimentalData/chromosome.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.chromosome-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.chromosome-0.0.4", "description": "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information; number or designation of the particular chromosome that the data is associated with.", + "type": "string", "anyOf": [ { "const": "1", diff --git a/terms/experimentalData/contrastAgent.json b/terms/experimentalData/contrastAgent.json index 1d57f65db..0ac6f0ecd 100644 --- a/terms/experimentalData/contrastAgent.json +++ b/terms/experimentalData/contrastAgent.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.contrastAgent-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.contrastAgent-0.0.2", "description": "Substance administered during an imaging procedure that allows delineation of internal structures.", "type": "string", "minLength": 1, diff --git a/terms/experimentalData/controlType.json b/terms/experimentalData/controlType.json index 90022d8df..942200064 100644 --- a/terms/experimentalData/controlType.json +++ b/terms/experimentalData/controlType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.controlType-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.controlType-0.0.4", "description": "Control samples suitable for normalization and batch correction", + "type": "string", "anyOf": [ { "const": "AIBL pool", diff --git a/terms/experimentalData/dataSubtype.json b/terms/experimentalData/dataSubtype.json index 13793cb0f..569992436 100644 --- a/terms/experimentalData/dataSubtype.json +++ b/terms/experimentalData/dataSubtype.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.dataSubtype-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.dataSubtype-0.0.2", "description": "Further qualification of dataType, which may be used to indicate the state of processing of the data, aggregation of the data, or presence of metadata.", + "type": "string", "anyOf": [ { "const": "normalized", diff --git a/terms/experimentalData/dataType.json b/terms/experimentalData/dataType.json index 2871ba683..4e668aba5 100644 --- a/terms/experimentalData/dataType.json +++ b/terms/experimentalData/dataType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.dataType-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.dataType-0.0.3", "description": "Types of input/output data in bioinformatics pipelines", + "type": "string", "anyOf": [ { "const": "Volume", diff --git a/terms/experimentalData/diagnosis.json b/terms/experimentalData/diagnosis.json index e37cc811e..c52e1aafa 100644 --- a/terms/experimentalData/diagnosis.json +++ b/terms/experimentalData/diagnosis.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.diagnosis-0.0.8", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.diagnosis-0.0.9", "description": "A diagnosis is the result of a medical investigation to identify a disorder from its signs and symptoms.", + "type": "string", "anyOf": [ { "const": "AD-DS", diff --git a/terms/experimentalData/diagnosisCriteria.json b/terms/experimentalData/diagnosisCriteria.json index c2154ddd7..cf1f668c7 100644 --- a/terms/experimentalData/diagnosisCriteria.json +++ b/terms/experimentalData/diagnosisCriteria.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.diagnosisCriteria-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.diagnosisCriteria-0.0.2", "type": "string", "description": "If a diagnosis is provided, the criteria it is based on" } diff --git a/terms/experimentalData/diagnosisDetail.json b/terms/experimentalData/diagnosisDetail.json index e54f3242b..d4125c3d0 100644 --- a/terms/experimentalData/diagnosisDetail.json +++ b/terms/experimentalData/diagnosisDetail.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.diagnosisDetail-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.diagnosisDetail-0.0.2", "type": "string", "description": "Subgroup of diagnosis (DSM or ICD code)" } diff --git a/terms/experimentalData/differentiationMethod.json b/terms/experimentalData/differentiationMethod.json index 082340a44..4dd99d82b 100644 --- a/terms/experimentalData/differentiationMethod.json +++ b/terms/experimentalData/differentiationMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.differentiationMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.differentiationMethod-0.0.2", "description": "The general strategy by which a reprogrammed or pluripotent cell is differentiated into a target cell.", + "type": "string", "anyOf": [ { "const": "directed differentiation", diff --git a/terms/experimentalData/exclude.json b/terms/experimentalData/exclude.json index a1d7579ee..675d17919 100644 --- a/terms/experimentalData/exclude.json +++ b/terms/experimentalData/exclude.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.exclude-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.exclude-0.0.2", "description": "Boolean flag indicating whether or not sample should be excluded from analysis", "type": "boolean" } diff --git a/terms/experimentalData/excludeReason.json b/terms/experimentalData/excludeReason.json index 834bde477..5c8db00c3 100644 --- a/terms/experimentalData/excludeReason.json +++ b/terms/experimentalData/excludeReason.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.excludeReason-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.excludeReason-0.0.2", "description": "Reason why a sample should be excluded from analysis", "type": "string" } diff --git a/terms/experimentalData/failedQC.json b/terms/experimentalData/failedQC.json index d06c1a8b6..98f493993 100644 --- a/terms/experimentalData/failedQC.json +++ b/terms/experimentalData/failedQC.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.failedQC-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.failedQC-0.0.3", "description": "Boolean flag indicating whether the sample or data failed QC checks", "type": "boolean" } diff --git a/terms/experimentalData/fastingState.json b/terms/experimentalData/fastingState.json index adbfefd33..4e50a7628 100644 --- a/terms/experimentalData/fastingState.json +++ b/terms/experimentalData/fastingState.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.fastingState-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.fastingState-0.0.2", "type": "boolean", "description": "Was individual fasting when sample was taken (true/false)?" } diff --git a/terms/experimentalData/fieldStrength.json b/terms/experimentalData/fieldStrength.json index 899de33df..dafa1a3c1 100644 --- a/terms/experimentalData/fieldStrength.json +++ b/terms/experimentalData/fieldStrength.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.fieldStrength-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.fieldStrength-0.0.2", "description": "The intensity of an electric, magnetic, or other field. Value should include unit of measurement.", "type": "string", "minLength": 1, diff --git a/terms/experimentalData/fragmentation.json b/terms/experimentalData/fragmentation.json index 3c27973c5..ab05e8570 100644 --- a/terms/experimentalData/fragmentation.json +++ b/terms/experimentalData/fragmentation.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.fragmentation-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.fragmentation-0.0.2", "type": "string", "description": "Specifies the mode by which MS2 and MS3 ions are generated" } diff --git a/terms/experimentalData/gDNAconc.json b/terms/experimentalData/gDNAconc.json index f8167a072..a1dc19fd6 100644 --- a/terms/experimentalData/gDNAconc.json +++ b/terms/experimentalData/gDNAconc.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.gDNAconc-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.gDNAconc-0.0.2", "type": "number", "description": "gDNA Concentration in ng" } diff --git a/terms/experimentalData/geneRLF.json b/terms/experimentalData/geneRLF.json index f5f118bce..b172e872b 100644 --- a/terms/experimentalData/geneRLF.json +++ b/terms/experimentalData/geneRLF.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.geneRLF-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.geneRLF-0.0.2", "type": "string", "description": "Reporter Library File (RLF) used to associate gene names with counts specified by the user in the Cartridge Definition File (https://www.genetics.pitt.edu/sites/default/files/pdfs/nCounter_Gene_Expression_Data_Analysis_Guidelines.pdf)" } diff --git a/terms/experimentalData/individualID.json b/terms/experimentalData/individualID.json index e5a071e43..8bc5414af 100644 --- a/terms/experimentalData/individualID.json +++ b/terms/experimentalData/individualID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.individualID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.individualID-0.0.2", "description": "Identifying string linked to the individual or animal being studied", "type": "string" } diff --git a/terms/experimentalData/individualIdSource.json b/terms/experimentalData/individualIdSource.json index c7476040b..b58dbe4da 100644 --- a/terms/experimentalData/individualIdSource.json +++ b/terms/experimentalData/individualIdSource.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.individualIdSource-0.0.10", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.individualIdSource-0.0.11", "description": "Database or repository to which individual ID maps", + "type": "string", "anyOf": [ { "const": "ABN", diff --git a/terms/experimentalData/ionMode.json b/terms/experimentalData/ionMode.json index 462b74d51..6fe206433 100644 --- a/terms/experimentalData/ionMode.json +++ b/terms/experimentalData/ionMode.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.ionMode-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.ionMode-0.0.2", "description": "Ionization polarity (positive, negative, polar)", "type": "string" } diff --git a/terms/experimentalData/isAssayControl.json b/terms/experimentalData/isAssayControl.json index 86517087a..b43ef6e31 100644 --- a/terms/experimentalData/isAssayControl.json +++ b/terms/experimentalData/isAssayControl.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.isAssayControl-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.isAssayControl-0.0.2", "description": "Boolean flag indicating whether or not a specimen is a technical or assay control. Examples include study pools or reference pools, blanks, or internal standards.", "type": "boolean" } diff --git a/terms/experimentalData/isCellLine.json b/terms/experimentalData/isCellLine.json index 0dd445247..63f0cde42 100644 --- a/terms/experimentalData/isCellLine.json +++ b/terms/experimentalData/isCellLine.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.isCellLine-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.isCellLine-0.0.2", "description": "Boolean flag indicating whether or not sample source is a cell line", "type": "boolean" } diff --git a/terms/experimentalData/isMultiIndividual.json b/terms/experimentalData/isMultiIndividual.json index 13c21ce41..837f05c6a 100644 --- a/terms/experimentalData/isMultiIndividual.json +++ b/terms/experimentalData/isMultiIndividual.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.isMultiIndividual-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.isMultiIndividual-0.0.2", "description": "Boolean flag indicating whether or not a file has data for multiple individuals", "type": "boolean" } diff --git a/terms/experimentalData/isMultiSpecimen.json b/terms/experimentalData/isMultiSpecimen.json index aa8733b5e..893b0fd04 100644 --- a/terms/experimentalData/isMultiSpecimen.json +++ b/terms/experimentalData/isMultiSpecimen.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.isMultiSpecimen-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.isMultiSpecimen-0.0.2", "description": "Boolean flag indicating whether or not a file has data for multiple specimens", "type": "boolean" } diff --git a/terms/experimentalData/isPostMortem.json b/terms/experimentalData/isPostMortem.json index df679671e..597020cff 100644 --- a/terms/experimentalData/isPostMortem.json +++ b/terms/experimentalData/isPostMortem.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.isPostMortem-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.isPostMortem-0.0.2", "type": "boolean", "description": "Was the sample taken after death (true/false)" } diff --git a/terms/experimentalData/isPrimaryCell.json b/terms/experimentalData/isPrimaryCell.json index a40aea13a..4ad37c138 100644 --- a/terms/experimentalData/isPrimaryCell.json +++ b/terms/experimentalData/isPrimaryCell.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.isPrimaryCell-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.isPrimaryCell-0.0.2", "description": "Boolean flag indicating whether or not cellType is primary, defined as 'A cell taken directly from a living organism, which is not immortalized'.", "type": "boolean" } diff --git a/terms/experimentalData/lambdaDNAconc.json b/terms/experimentalData/lambdaDNAconc.json index 0147f7f5a..66f5206ba 100644 --- a/terms/experimentalData/lambdaDNAconc.json +++ b/terms/experimentalData/lambdaDNAconc.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.lambdaDNAconc-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.lambdaDNAconc-0.0.2", "type": "number", "description": "Lambda DNA spike-in concentration in ng" } diff --git a/terms/experimentalData/ligand.json b/terms/experimentalData/ligand.json index e5354bb27..9dded2b7d 100644 --- a/terms/experimentalData/ligand.json +++ b/terms/experimentalData/ligand.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.ligand-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.ligand-0.0.2", "description": "An ion, molecule or molecular group that binds to a substance to form a larger complex.", "type": "string", "minLength": 1, diff --git a/terms/experimentalData/metaboliteType.json b/terms/experimentalData/metaboliteType.json index 324936aac..bcaad68f5 100644 --- a/terms/experimentalData/metaboliteType.json +++ b/terms/experimentalData/metaboliteType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.metaboliteType-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.metaboliteType-0.0.4", "description": "Class of metabolite.", + "type": "string", "anyOf": [ { "const": "acylcarnitines", diff --git a/terms/experimentalData/metadataType.json b/terms/experimentalData/metadataType.json index 9955a5763..5e0ce4663 100644 --- a/terms/experimentalData/metadataType.json +++ b/terms/experimentalData/metadataType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.metadataType-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.metadataType-0.0.3", "description": "For files of dataSubtype: metadata, a description of the type of metadata in the file.", + "type": "string", "anyOf": [ { "const": "analytical covariates", diff --git a/terms/experimentalData/modelSystemType.json b/terms/experimentalData/modelSystemType.json index 9f0fa250a..1806e8b0b 100644 --- a/terms/experimentalData/modelSystemType.json +++ b/terms/experimentalData/modelSystemType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.modelSystemType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.modelSystemType-0.0.2", "description": "Type of model system.", + "type": "string", "anyOf": [ { "const": "animal", diff --git a/terms/experimentalData/multiconsensusStudyFileID.json b/terms/experimentalData/multiconsensusStudyFileID.json index 01eb606aa..89356d971 100644 --- a/terms/experimentalData/multiconsensusStudyFileID.json +++ b/terms/experimentalData/multiconsensusStudyFileID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.multiconsensusStudyFileID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.multiconsensusStudyFileID-0.0.2", "type": "string", "description": "F-number assigned by Termo Proteome Discoverer software to different batches (plexes) of RAW (direct Thermo mass spectrometer output) files (F01, F02, etc.)" } diff --git a/terms/experimentalData/nFemale.json b/terms/experimentalData/nFemale.json index 8af964428..65420b2c0 100644 --- a/terms/experimentalData/nFemale.json +++ b/terms/experimentalData/nFemale.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.nFemale-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.nFemale-0.0.2", "type": "integer", "description": "Number of female individuals in a pooled Drosophila sample" } diff --git a/terms/experimentalData/nIndividuals.json b/terms/experimentalData/nIndividuals.json index 653f731d3..aac4c862e 100644 --- a/terms/experimentalData/nIndividuals.json +++ b/terms/experimentalData/nIndividuals.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.nIndividuals-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.nIndividuals-0.0.2", "type": "integer", "description": "Number of individuals in a pooled Drosophila sample" } diff --git a/terms/experimentalData/nMale.json b/terms/experimentalData/nMale.json index e5a859732..c98dafa6d 100644 --- a/terms/experimentalData/nMale.json +++ b/terms/experimentalData/nMale.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.nMale-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.nMale-0.0.2", "type": "integer", "description": "Number of male individuals in a pooled Drosophila sample" } diff --git a/terms/experimentalData/numberCells.json b/terms/experimentalData/numberCells.json index 887ccd051..f4aee5eda 100644 --- a/terms/experimentalData/numberCells.json +++ b/terms/experimentalData/numberCells.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.numberCells-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.numberCells-0.0.2", "type": "integer", "description": "Number of cells or nuclei sequenced" } diff --git a/terms/experimentalData/organ.json b/terms/experimentalData/organ.json index 5f002c34f..0c6681f71 100644 --- a/terms/experimentalData/organ.json +++ b/terms/experimentalData/organ.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.organ-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.organ-0.0.4", "description": "A unique macroscopic (gross) anatomic structure that performs specific functions. It is composed of various tissues. An organ is part of an anatomic system or a body region.", + "type": "string", "anyOf": [ { "const": "blood", diff --git a/terms/experimentalData/organWeight.json b/terms/experimentalData/organWeight.json index e2d0c82e5..beb46fd34 100644 --- a/terms/experimentalData/organWeight.json +++ b/terms/experimentalData/organWeight.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.organWeight-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.organWeight-0.0.2", "type": "number", "description": "Post-mortem weight of organ (in grams)" } diff --git a/terms/experimentalData/otherMedicalDx.json b/terms/experimentalData/otherMedicalDx.json index 4b58d051c..2beff377d 100644 --- a/terms/experimentalData/otherMedicalDx.json +++ b/terms/experimentalData/otherMedicalDx.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.otherMedicalDx-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.otherMedicalDx-0.0.2", "type": "string", "description": "Other medical diagnoses unrelated to the primary study indication" } diff --git a/terms/experimentalData/passage.json b/terms/experimentalData/passage.json index cc3059fc4..71cfdc58c 100644 --- a/terms/experimentalData/passage.json +++ b/terms/experimentalData/passage.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.passage-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.passage-0.0.2", "type": "integer", "description": "Number of times a cell culture has been subcultured" } diff --git a/terms/experimentalData/pcrCycles.json b/terms/experimentalData/pcrCycles.json index b387e9e4d..864a4ff8e 100644 --- a/terms/experimentalData/pcrCycles.json +++ b/terms/experimentalData/pcrCycles.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.pcrCycles-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.pcrCycles-0.0.2", "type": "integer", "description": "Number of PCR cycles to amplify transposased DNA fragments" } diff --git a/terms/experimentalData/plateCoating.json b/terms/experimentalData/plateCoating.json index 9ea2385bb..ee931f3c7 100644 --- a/terms/experimentalData/plateCoating.json +++ b/terms/experimentalData/plateCoating.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.plateCoating-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.plateCoating-0.0.2", "description": "Matrix coating applied to tissue culture plates.", "type": "string", "minLength": 1, diff --git a/terms/experimentalData/platform.json b/terms/experimentalData/platform.json index 1c5d64cba..7cacf0acd 100644 --- a/terms/experimentalData/platform.json +++ b/terms/experimentalData/platform.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.platform-0.0.15", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.platform-0.0.16", "description": "The specific version (manufacturer, model, etc.) of a technology that is used to carry out a laboratory or computational experiment.", + "type": "string", "anyOf": [ { "const": "Affy5.0", diff --git a/terms/experimentalData/platformLocation.json b/terms/experimentalData/platformLocation.json index 606055274..a45681e40 100644 --- a/terms/experimentalData/platformLocation.json +++ b/terms/experimentalData/platformLocation.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.platformLocation-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.platformLocation-0.0.2", "description": "Laboratory where data generation platform was located", "type": "string" } diff --git a/terms/experimentalData/reprogrammedCellType.json b/terms/experimentalData/reprogrammedCellType.json index 18b69a4d3..4e4ca0d90 100644 --- a/terms/experimentalData/reprogrammedCellType.json +++ b/terms/experimentalData/reprogrammedCellType.json @@ -1,10 +1,10 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.reprogrammedCellType-0.0.4", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.reprogrammedCellType-0.0.5", "description": "Cell type the specimen is modeling", "properties": { "reprogrammedCellType": { - "$ref": "sage.annotations-experimentalData.cellType-0.0.7" + "$ref": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.cellType-0.0.8" } } } diff --git a/terms/experimentalData/reprogrammingMethod.json b/terms/experimentalData/reprogrammingMethod.json index 0adecb93c..26336ed43 100644 --- a/terms/experimentalData/reprogrammingMethod.json +++ b/terms/experimentalData/reprogrammingMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.reprogrammingMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.reprogrammingMethod-0.0.2", "description": "The method by which source cells were reprogrammed into pluripotent stem cells.", + "type": "string", "anyOf": [ { "const": "CytoTune iPS 2.0 Sendai Reprogramming Kit", diff --git a/terms/experimentalData/resolution.json b/terms/experimentalData/resolution.json index f9eb11109..3937dfde0 100644 --- a/terms/experimentalData/resolution.json +++ b/terms/experimentalData/resolution.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.resolution-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.resolution-0.0.2", "type": "number", "description": "Minimum nominal mass-over-charge (m/z) difference detectable" } diff --git a/terms/experimentalData/sampleStatus.json b/terms/experimentalData/sampleStatus.json index 15241b01d..bc378268b 100644 --- a/terms/experimentalData/sampleStatus.json +++ b/terms/experimentalData/sampleStatus.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.sampleStatus-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.sampleStatus-0.0.2", "description": "Conditions under which sample is kept", + "type": "string", "anyOf": [ { "const": "formalin-fixed", diff --git a/terms/experimentalData/samplingAge.json b/terms/experimentalData/samplingAge.json index c6ed7cc2a..5f580eeae 100644 --- a/terms/experimentalData/samplingAge.json +++ b/terms/experimentalData/samplingAge.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.samplingAge-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.samplingAge-0.0.2", "type": "number", "description": "Age of the individual when the sample was taken" } diff --git a/terms/experimentalData/samplingAgeUnits.json b/terms/experimentalData/samplingAgeUnits.json index 9cc541c7d..0d4f1bd7d 100644 --- a/terms/experimentalData/samplingAgeUnits.json +++ b/terms/experimentalData/samplingAgeUnits.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.samplingAgeUnits-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.samplingAgeUnits-0.0.2", "description": "Age at sampling units.", + "type": "string", "anyOf": [ { "const": "days", diff --git a/terms/experimentalData/scanID.json b/terms/experimentalData/scanID.json index 55007d743..66ef0504c 100644 --- a/terms/experimentalData/scanID.json +++ b/terms/experimentalData/scanID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.scanID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.scanID-0.0.2", "description": "The ID of a sample, specimen, or individual in a scan or imaging file.", "type": "string", "minLength": 1, diff --git a/terms/experimentalData/sex.json b/terms/experimentalData/sex.json index d36df738e..904998685 100644 --- a/terms/experimentalData/sex.json +++ b/terms/experimentalData/sex.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.sex-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.sex-0.0.2", "description": "Sex assigned at birth, or by sequencing", + "type": "string", "anyOf": [ { "const": "male", diff --git a/terms/experimentalData/sourceCell.json b/terms/experimentalData/sourceCell.json index 04db584e8..2429771fe 100644 --- a/terms/experimentalData/sourceCell.json +++ b/terms/experimentalData/sourceCell.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.sourceCell-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.sourceCell-0.0.2", "description": "Initial cell type the target cell was derived from, before reprogramming or differentiation.", + "type": "string", "anyOf": [ { "const": "astrocytes", diff --git a/terms/experimentalData/species.json b/terms/experimentalData/species.json index dac587729..07517d12d 100644 --- a/terms/experimentalData/species.json +++ b/terms/experimentalData/species.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.species-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.species-0.0.2", "description": "The name of a species (typically a taxonomic group) of organism.", + "type": "string", "anyOf": [ { "const": "Human", diff --git a/terms/experimentalData/specimenID.json b/terms/experimentalData/specimenID.json index d2e234b7f..019ba4e6c 100644 --- a/terms/experimentalData/specimenID.json +++ b/terms/experimentalData/specimenID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.specimenID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.specimenID-0.0.2", "description": "Identifying string linked to a particular sample or specimen", "type": "string" } diff --git a/terms/experimentalData/specimenIdSource.json b/terms/experimentalData/specimenIdSource.json index ac66768a3..bde9361ed 100644 --- a/terms/experimentalData/specimenIdSource.json +++ b/terms/experimentalData/specimenIdSource.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.specimenIdSource-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.specimenIdSource-0.0.3", "description": "The repository or database to which a specimenID maps; or, the group or lab that generated the specimen. For cell culture studies, the commercial source or lab that generated the cells.", "type": "string" } diff --git a/terms/experimentalData/spectrometerFrequency.json b/terms/experimentalData/spectrometerFrequency.json index 778c17ffb..d2b1a4dce 100644 --- a/terms/experimentalData/spectrometerFrequency.json +++ b/terms/experimentalData/spectrometerFrequency.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.spectrometerFrequency-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.spectrometerFrequency-0.0.2", "description": "The frequency at which a spectrometer causes hydrogen atoms to resonate (in MHz).", "type": "number" } diff --git a/terms/experimentalData/stemCellBaseMedium.json b/terms/experimentalData/stemCellBaseMedium.json index ec1d8a399..0597b1739 100644 --- a/terms/experimentalData/stemCellBaseMedium.json +++ b/terms/experimentalData/stemCellBaseMedium.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.stemCellBaseMedium-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.stemCellBaseMedium-0.0.2", "description": "Culture medium that stem cells are grown in during differentiation.", "type": "string", "minLength": 1, diff --git a/terms/experimentalData/temperature.json b/terms/experimentalData/temperature.json index 43c699e05..3e55a9c6a 100644 --- a/terms/experimentalData/temperature.json +++ b/terms/experimentalData/temperature.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.temperature-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.temperature-0.0.2", "type": "number", "description": "Temperature in Celsius (C) relevant to specimen or experimental condition" } diff --git a/terms/experimentalData/terminalDifferentiationPoint.json b/terms/experimentalData/terminalDifferentiationPoint.json index 922c25db1..f4d6486eb 100644 --- a/terms/experimentalData/terminalDifferentiationPoint.json +++ b/terms/experimentalData/terminalDifferentiationPoint.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.terminalDifferentiationPoint-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.terminalDifferentiationPoint-0.0.2", "description": "The terminal differentiation point (TD) of a cell in days.", "type": "string" } diff --git a/terms/experimentalData/tissue.json b/terms/experimentalData/tissue.json index 510bf4dbe..62c12286e 100644 --- a/terms/experimentalData/tissue.json +++ b/terms/experimentalData/tissue.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-experimentalData.tissue-0.0.8", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.tissue-0.0.9", "description": "A tissue is a mereologically maximal collection of cells that together perform physiological function.", + "type": "string", "anyOf": [ { "const": "amygdala", diff --git a/terms/experimentalData/tissueVolume.json b/terms/experimentalData/tissueVolume.json index 6187c4cfd..e6a1533d9 100644 --- a/terms/experimentalData/tissueVolume.json +++ b/terms/experimentalData/tissueVolume.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.tissueVolume-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.tissueVolume-0.0.2", "type": "number", "description": "Volume of tissue sample in microliters" } diff --git a/terms/experimentalData/tissueWeight.json b/terms/experimentalData/tissueWeight.json index 2a2e8c076..6fb4765e1 100644 --- a/terms/experimentalData/tissueWeight.json +++ b/terms/experimentalData/tissueWeight.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.tissueWeight-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.tissueWeight-0.0.2", "type": "number", "description": "Mass of tissue specimen in mg" } diff --git a/terms/experimentalData/totalReads.json b/terms/experimentalData/totalReads.json index fe28e410c..2a7e99e8d 100644 --- a/terms/experimentalData/totalReads.json +++ b/terms/experimentalData/totalReads.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.totalReads-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.totalReads-0.0.2", "type": "number", "description": "Total number of sequencing reads from a library" } diff --git a/terms/experimentalData/visitNumber.json b/terms/experimentalData/visitNumber.json index 8cdbd1544..c725ae6dd 100644 --- a/terms/experimentalData/visitNumber.json +++ b/terms/experimentalData/visitNumber.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-experimentalData.visitNumber-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-experimentalData.visitNumber-0.0.2", "type": "number", "description": "For clinical trials or longitudinal studies, the visit number when the sample was collected" } diff --git a/terms/genie/cBioFileFormat.json b/terms/genie/cBioFileFormat.json index cbb925c80..e9f22c69c 100644 --- a/terms/genie/cBioFileFormat.json +++ b/terms/genie/cBioFileFormat.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-genie.cBioFileFormat-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-genie.cBioFileFormat-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "clinical", diff --git a/terms/genie/center.json b/terms/genie/center.json index 33fa7c306..89496eb9a 100644 --- a/terms/genie/center.json +++ b/terms/genie/center.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-genie.center-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-genie.center-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "NKI", diff --git a/terms/genie/fileStage.json b/terms/genie/fileStage.json index 1d3308e35..9067cf437 100644 --- a/terms/genie/fileStage.json +++ b/terms/genie/fileStage.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-genie.fileStage-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-genie.fileStage-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "staging", diff --git a/terms/immunoAssays/antibody.json b/terms/immunoAssays/antibody.json index 7b7635b25..f20242145 100644 --- a/terms/immunoAssays/antibody.json +++ b/terms/immunoAssays/antibody.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibody-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibody-0.0.2", "description": "An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph", "type": "string" } diff --git a/terms/immunoAssays/antibodyAmount.json b/terms/immunoAssays/antibodyAmount.json index e050b6030..ab2919331 100644 --- a/terms/immunoAssays/antibodyAmount.json +++ b/terms/immunoAssays/antibodyAmount.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibodyAmount-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibodyAmount-0.0.2", "description": "Amount of antibody used for an assay", "type": "number" } diff --git a/terms/immunoAssays/antibodyAmountUnits.json b/terms/immunoAssays/antibodyAmountUnits.json index 80e411323..c24a6ccfe 100644 --- a/terms/immunoAssays/antibodyAmountUnits.json +++ b/terms/immunoAssays/antibodyAmountUnits.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibodyAmountUnits-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibodyAmountUnits-0.0.2", "description": "Units of measure for the amount of antibody used for an assay", "type": "string" } diff --git a/terms/immunoAssays/antibodyConcentration.json b/terms/immunoAssays/antibodyConcentration.json index 221cd155f..0bcfaaa85 100644 --- a/terms/immunoAssays/antibodyConcentration.json +++ b/terms/immunoAssays/antibodyConcentration.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibodyConcentration-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibodyConcentration-0.0.2", "description": "Concentration of antibody used in an assay", "type": "number" } diff --git a/terms/immunoAssays/antibodyConcentrationUnits.json b/terms/immunoAssays/antibodyConcentrationUnits.json index ffc59d470..2614c7258 100644 --- a/terms/immunoAssays/antibodyConcentrationUnits.json +++ b/terms/immunoAssays/antibodyConcentrationUnits.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibodyConcentrationUnits-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibodyConcentrationUnits-0.0.2", "description": "Units of measure for the concentration of antibody used in an assay", "type": "string" } diff --git a/terms/immunoAssays/antibodyDilution.json b/terms/immunoAssays/antibodyDilution.json index 3d1386204..a0796dbd5 100644 --- a/terms/immunoAssays/antibodyDilution.json +++ b/terms/immunoAssays/antibodyDilution.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibodyDilution-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibodyDilution-0.0.2", "description": "Ratio of antibody used in an assay", "type": "string" } diff --git a/terms/immunoAssays/antibodyOrder.json b/terms/immunoAssays/antibodyOrder.json index a8bc36ea0..5ec3f5476 100644 --- a/terms/immunoAssays/antibodyOrder.json +++ b/terms/immunoAssays/antibodyOrder.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.antibodyOrder-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.antibodyOrder-0.0.3", "description": "For ELISA assays, specifies whether the antibody was used as the primary or secondary antibody", "source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775980/", "type": "string", diff --git a/terms/immunoAssays/bindingMolecule.json b/terms/immunoAssays/bindingMolecule.json index e4a24cab4..75d9dad4a 100644 --- a/terms/immunoAssays/bindingMolecule.json +++ b/terms/immunoAssays/bindingMolecule.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.bindingMolecule-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.bindingMolecule-0.0.2", "type": "string", "description": "The binding molecule used in the assay" } diff --git a/terms/immunoAssays/catalogNumber.json b/terms/immunoAssays/catalogNumber.json index 46bd86e83..372d8be63 100644 --- a/terms/immunoAssays/catalogNumber.json +++ b/terms/immunoAssays/catalogNumber.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.catalogNumber-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.catalogNumber-0.0.2", "description": "The identifier assigned to a product, usually in the list of products published by a reseller or manufacturer", "type": "string" } diff --git a/terms/immunoAssays/chromatinAmount.json b/terms/immunoAssays/chromatinAmount.json index 2f4ee2c18..4a1d36c23 100644 --- a/terms/immunoAssays/chromatinAmount.json +++ b/terms/immunoAssays/chromatinAmount.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.chromatinAmount-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.chromatinAmount-0.0.2", "description": "Amount in ug of chromatin used for an assay", "type": "number" } diff --git a/terms/immunoAssays/chromatinAmountUnits.json b/terms/immunoAssays/chromatinAmountUnits.json index baff2b2ab..ceed75fef 100644 --- a/terms/immunoAssays/chromatinAmountUnits.json +++ b/terms/immunoAssays/chromatinAmountUnits.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.chromatinAmountUnits-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.chromatinAmountUnits-0.0.2", "description": "Units of measure for the amount of chromatin used for an assay", "type": "string" } diff --git a/terms/immunoAssays/elisaType.json b/terms/immunoAssays/elisaType.json index e57084225..42e8d0c8d 100644 --- a/terms/immunoAssays/elisaType.json +++ b/terms/immunoAssays/elisaType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.elisaType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.elisaType-0.0.2", "description": "Type of ELISA assay", + "type": "string", "anyOf": [ { "const": "direct", diff --git a/terms/immunoAssays/fluorophore.json b/terms/immunoAssays/fluorophore.json index 6117b5b32..606a7506f 100644 --- a/terms/immunoAssays/fluorophore.json +++ b/terms/immunoAssays/fluorophore.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.fluorophore-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.fluorophore-0.0.3", "description": "A fluorophore is a component of a molecule which causes a molecule to be fluorescent.", "type": "string" } diff --git a/terms/immunoAssays/lotNumber.json b/terms/immunoAssays/lotNumber.json index 1a0804b56..bc1e69b9a 100644 --- a/terms/immunoAssays/lotNumber.json +++ b/terms/immunoAssays/lotNumber.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.lotNumber-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.lotNumber-0.0.2", "description": "A distinctive alpha-numeric identification code assigned by the manufacturer or distributor to a specific quantity of manufactured material or product within a batch", "type": "string" } diff --git a/terms/immunoAssays/vendor.json b/terms/immunoAssays/vendor.json index d80812386..0e41fa21a 100644 --- a/terms/immunoAssays/vendor.json +++ b/terms/immunoAssays/vendor.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-immunoAssays.vendor-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-immunoAssays.vendor-0.0.2", "description": "Commercial or institutional source of a component used in an assay", "type": "string" } diff --git a/terms/manifestKeys/filename.json b/terms/manifestKeys/filename.json index cf551b042..5bb48b995 100644 --- a/terms/manifestKeys/filename.json +++ b/terms/manifestKeys/filename.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-manifestKeys.filename-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-manifestKeys.filename-0.0.2", "description": "The name of a file.", "type": "string", "minLength": 1, diff --git a/terms/manifestKeys/parent.json b/terms/manifestKeys/parent.json index 06acf645f..17d3ce453 100644 --- a/terms/manifestKeys/parent.json +++ b/terms/manifestKeys/parent.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-manifestKeys.parent-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-manifestKeys.parent-0.0.2", "type": "string", "description": "Synapse ID of the folder that data will be uploaded to" } diff --git a/terms/manifestKeys/path.json b/terms/manifestKeys/path.json index e6fa464ed..7cddf5b5d 100644 --- a/terms/manifestKeys/path.json +++ b/terms/manifestKeys/path.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-manifestKeys.path-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-manifestKeys.path-0.0.2", "type": "string", "description": "File path where data files that will be uploaded are stored" } diff --git a/terms/network/networkEdgeType.json b/terms/network/networkEdgeType.json index ac4e57ca6..fd63c14ed 100644 --- a/terms/network/networkEdgeType.json +++ b/terms/network/networkEdgeType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-network.networkEdgeType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-network.networkEdgeType-0.0.2", "description": "Method used to derive the edge in a network", + "type": "string", "anyOf": [ { "const": "protein-protein interaction", diff --git a/terms/neuro/BrodmannArea.json b/terms/neuro/BrodmannArea.json index d8041f6e0..1c95f44ee 100644 --- a/terms/neuro/BrodmannArea.json +++ b/terms/neuro/BrodmannArea.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.BrodmannArea-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.BrodmannArea-0.0.2", "description": "A segmentation of the cerebral cortex on the basis of cytoarchitecture", "type": "string" } diff --git a/terms/neuro/PMI.json b/terms/neuro/PMI.json index 05c02bf55..6b430ada5 100644 --- a/terms/neuro/PMI.json +++ b/terms/neuro/PMI.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.PMI-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.PMI-0.0.3", "description": "Post-mortem interval", "type": "string" } diff --git a/terms/neuro/PMICertain.json b/terms/neuro/PMICertain.json index 4df74645b..05bbbf764 100644 --- a/terms/neuro/PMICertain.json +++ b/terms/neuro/PMICertain.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-neuro.PMICertain-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.PMICertain-0.0.2", "type": "boolean", "description": "Is PMI certain, i.e. is time of death known (true/false)" } diff --git a/terms/neuro/bedding.json b/terms/neuro/bedding.json index e4f80b1cd..35debda19 100644 --- a/terms/neuro/bedding.json +++ b/terms/neuro/bedding.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.bedding-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.bedding-0.0.3", "description": "Rodent bedding material", + "type": "string", "anyOf": [ { "const": "Alpha-dri", diff --git a/terms/neuro/fileSubFormat.json b/terms/neuro/fileSubFormat.json index 9f12ef55f..d884391a5 100644 --- a/terms/neuro/fileSubFormat.json +++ b/terms/neuro/fileSubFormat.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.fileSubFormat-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.fileSubFormat-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "TranscriptomeSAM", diff --git a/terms/neuro/grant.json b/terms/neuro/grant.json index 96eca8014..a93d1d5bd 100644 --- a/terms/neuro/grant.json +++ b/terms/neuro/grant.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.grant-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.grant-0.0.2", "description": "Grant number including activity code, institute code, and serial number (e.g. U01MH103392)", "type": "string" } diff --git a/terms/neuro/hemisphere.json b/terms/neuro/hemisphere.json index 981ed1645..b7ad42810 100644 --- a/terms/neuro/hemisphere.json +++ b/terms/neuro/hemisphere.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.hemisphere-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.hemisphere-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "left", diff --git a/terms/neuro/isConsortiumAnalysis.json b/terms/neuro/isConsortiumAnalysis.json index 2cc0569b6..27c673729 100644 --- a/terms/neuro/isConsortiumAnalysis.json +++ b/terms/neuro/isConsortiumAnalysis.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.isConsortiumAnalysis-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.isConsortiumAnalysis-0.0.2", "description": "Collaborative consortium analysis", "type": "boolean" } diff --git a/terms/neuro/isModelSystem.json b/terms/neuro/isModelSystem.json index 799d74548..6d424cd5a 100644 --- a/terms/neuro/isModelSystem.json +++ b/terms/neuro/isModelSystem.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.isModelSystem-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.isModelSystem-0.0.2", "description": "", "type": "boolean" } diff --git a/terms/neuro/modelSystemName.json b/terms/neuro/modelSystemName.json index 9683253cb..c309a01d9 100644 --- a/terms/neuro/modelSystemName.json +++ b/terms/neuro/modelSystemName.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.modelSystemName-0.0.5", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.modelSystemName-0.0.6", "description": "", + "type": "string", "anyOf": [ { "const": "3xTg-AD", diff --git a/terms/neuro/modelSystemStrainNomenclature.json b/terms/neuro/modelSystemStrainNomenclature.json index 80b3a2e20..918b09e43 100644 --- a/terms/neuro/modelSystemStrainNomenclature.json +++ b/terms/neuro/modelSystemStrainNomenclature.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.modelSystemStrainNomenclature-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.modelSystemStrainNomenclature-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "B6.Cg-Tg(APPswe,PSEN1dE9)85Dbo/Mmjax", diff --git a/terms/neuro/pH.json b/terms/neuro/pH.json index 3cc5e2116..23ac9d892 100644 --- a/terms/neuro/pH.json +++ b/terms/neuro/pH.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.pH-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.pH-0.0.3", "description": "A scale used to specify the acidity or basicity of an aqueous or other liquid solution", "type": "string" } diff --git a/terms/neuro/study.json b/terms/neuro/study.json index e97fe0032..ef1383bd5 100644 --- a/terms/neuro/study.json +++ b/terms/neuro/study.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.study-0.0.29", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.study-0.0.30", "description": "Study", + "type": "string", "anyOf": [ { "const": "3Dchromatin", diff --git a/terms/neuro/treatmentDose.json b/terms/neuro/treatmentDose.json index b1eecac7f..c7c080ea2 100644 --- a/terms/neuro/treatmentDose.json +++ b/terms/neuro/treatmentDose.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.treatmentDose-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.treatmentDose-0.0.2", "description": "Dose of treatment used, including units and timeframe", "type": "string" } diff --git a/terms/neuro/treatmentDuration.json b/terms/neuro/treatmentDuration.json index 7b342ce3b..06a93a0f2 100644 --- a/terms/neuro/treatmentDuration.json +++ b/terms/neuro/treatmentDuration.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.treatmentDuration-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.treatmentDuration-0.0.2", "description": "Planned or actual duration of any experimental or clinical treatment.", "type": "string", "minLength": 1, diff --git a/terms/neuro/treatmentType.json b/terms/neuro/treatmentType.json index 16fdcc2d5..92555ccf4 100644 --- a/terms/neuro/treatmentType.json +++ b/terms/neuro/treatmentType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.treatmentType-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.treatmentType-0.0.3", "description": "", + "type": "string", "anyOf": [ { "const": "haloperidol", diff --git a/terms/neuro/waterpH.json b/terms/neuro/waterpH.json index c156a33e3..b1078d6c0 100644 --- a/terms/neuro/waterpH.json +++ b/terms/neuro/waterpH.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neuro.waterpH-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neuro.waterpH-0.0.2", "description": "pH of water fed to the animal", "type": "number", "minimum": 0, diff --git a/terms/neurofibromatosis/nf1Genotype.json b/terms/neurofibromatosis/nf1Genotype.json index c3586a089..b971531c9 100644 --- a/terms/neurofibromatosis/nf1Genotype.json +++ b/terms/neurofibromatosis/nf1Genotype.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neurofibromatosis.nf1Genotype-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neurofibromatosis.nf1Genotype-0.0.2", "description": "Genotype of NF1 gene, if known", + "type": "string", "anyOf": [ { "const": "-/-", diff --git a/terms/neurofibromatosis/nf2Genotype.json b/terms/neurofibromatosis/nf2Genotype.json index 1b63dc129..f0af9e8c0 100644 --- a/terms/neurofibromatosis/nf2Genotype.json +++ b/terms/neurofibromatosis/nf2Genotype.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neurofibromatosis.nf2Genotype-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neurofibromatosis.nf2Genotype-0.0.2", "description": "Genotype of NF2 gene, if known", + "type": "string", "anyOf": [ { "const": "-/-", diff --git a/terms/neurofibromatosis/reportMilestone.json b/terms/neurofibromatosis/reportMilestone.json index c46d3400d..55eb1dfac 100644 --- a/terms/neurofibromatosis/reportMilestone.json +++ b/terms/neurofibromatosis/reportMilestone.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-neurofibromatosis.reportMilestone-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-neurofibromatosis.reportMilestone-0.0.2", "description": "This key represents the milestone for which the report was submitted, a number representing number of months.", "type": "integer" } diff --git a/terms/ngs/commercialSource.json b/terms/ngs/commercialSource.json index 647966319..49ad788b7 100644 --- a/terms/ngs/commercialSource.json +++ b/terms/ngs/commercialSource.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.commercialSource-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.commercialSource-0.0.2", "description": "Nucleic or amino acids characterized that originate from a commercial source.", + "type": "string", "anyOf": [ { "const": "Promega G1471", diff --git a/terms/ngs/directionalBSseqLibrary.json b/terms/ngs/directionalBSseqLibrary.json index 8d9d6fc03..e7dc621f2 100644 --- a/terms/ngs/directionalBSseqLibrary.json +++ b/terms/ngs/directionalBSseqLibrary.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-ngs.directionalBSseqLibrary-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.directionalBSseqLibrary-0.0.2", "description": "Indicates whether or not the bisulfiteSeq library is directional", "type": "boolean" } diff --git a/terms/ngs/dissociationMethod.json b/terms/ngs/dissociationMethod.json index 9fa1287cc..5d0d8cab0 100644 --- a/terms/ngs/dissociationMethod.json +++ b/terms/ngs/dissociationMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.dissociationMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.dissociationMethod-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": " 10x_v2", diff --git a/terms/ngs/dnaExtractionMethod.json b/terms/ngs/dnaExtractionMethod.json index d16173e13..5f64be8bd 100644 --- a/terms/ngs/dnaExtractionMethod.json +++ b/terms/ngs/dnaExtractionMethod.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.dnaExtractionMethod-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.dnaExtractionMethod-0.0.2", "description": "The general strategy by which the DNA was extracted", "type": "string" } diff --git a/terms/ngs/isStranded.json b/terms/ngs/isStranded.json index 8ee3a5801..5c125e513 100644 --- a/terms/ngs/isStranded.json +++ b/terms/ngs/isStranded.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.isStranded-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.isStranded-0.0.2", "description": "Whether or not the library is stranded.", "type": "boolean" } diff --git a/terms/ngs/libraryID.json b/terms/ngs/libraryID.json index 127e2716a..65d900424 100644 --- a/terms/ngs/libraryID.json +++ b/terms/ngs/libraryID.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-ngs.libraryID-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.libraryID-0.0.2", "type": "string", "description": "Library ID as provided by the lab" } diff --git a/terms/ngs/libraryPrep.json b/terms/ngs/libraryPrep.json index d96c0722c..e5f43e050 100644 --- a/terms/ngs/libraryPrep.json +++ b/terms/ngs/libraryPrep.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.libraryPrep-0.0.6", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.libraryPrep-0.0.7", "description": "The general strategy by which the library was prepared", + "type": "string", "anyOf": [ { "const": "amplicon", diff --git a/terms/ngs/libraryPreparationMethod.json b/terms/ngs/libraryPreparationMethod.json index 50917de8d..f1c714cf3 100644 --- a/terms/ngs/libraryPreparationMethod.json +++ b/terms/ngs/libraryPreparationMethod.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.libraryPreparationMethod-0.0.4", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.libraryPreparationMethod-0.0.5", "description": "Method by which library was prepared", + "type": "string", "anyOf": [ { "const": "10x", diff --git a/terms/ngs/libraryType.json b/terms/ngs/libraryType.json index 0b0d55726..7b7b72b1c 100644 --- a/terms/ngs/libraryType.json +++ b/terms/ngs/libraryType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.libraryType-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.libraryType-0.0.3", "description": "The type of library, in assays where samples are barcoded or hashed for multiplexing or each sample has multiple libraries amplified separately before pooled sequencing.", + "type": "string", "anyOf": [ { "const": "ADT", diff --git a/terms/ngs/libraryVersion.json b/terms/ngs/libraryVersion.json index c1530e58e..f94d112cd 100644 --- a/terms/ngs/libraryVersion.json +++ b/terms/ngs/libraryVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-ngs.libraryVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.libraryVersion-0.0.2", "type": "string", "description": "Library Version: for example, rnaSeq 10x library version" } diff --git a/terms/ngs/nucleicAcidSource.json b/terms/ngs/nucleicAcidSource.json index 8ad75ba2b..4253967c2 100644 --- a/terms/ngs/nucleicAcidSource.json +++ b/terms/ngs/nucleicAcidSource.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.nucleicAcidSource-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.nucleicAcidSource-0.0.3", "description": "", + "type": "string", "anyOf": [ { "const": "bulk cell", diff --git a/terms/ngs/readLength.json b/terms/ngs/readLength.json index c3233fb11..d7a359d6d 100644 --- a/terms/ngs/readLength.json +++ b/terms/ngs/readLength.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.readLength-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.readLength-0.0.2", "description": "The length of the read", "type": "string" } diff --git a/terms/ngs/readPair.json b/terms/ngs/readPair.json index 0c6390992..bf644a224 100644 --- a/terms/ngs/readPair.json +++ b/terms/ngs/readPair.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.readPair-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.readPair-0.0.2", "description": "The read of origin", + "type": "string", "anyOf": [ { "const": 1, diff --git a/terms/ngs/readPairOrientation.json b/terms/ngs/readPairOrientation.json index 9e713bda5..27f741ba8 100644 --- a/terms/ngs/readPairOrientation.json +++ b/terms/ngs/readPairOrientation.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.readPairOrientation-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.readPairOrientation-0.0.2", "description": "The relative orientation of the reads in a paired-end protocol", + "type": "string", "anyOf": [ { "const": "inward", diff --git a/terms/ngs/readStrandOrigin.json b/terms/ngs/readStrandOrigin.json index 2371538de..abf5c8380 100644 --- a/terms/ngs/readStrandOrigin.json +++ b/terms/ngs/readStrandOrigin.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.readStrandOrigin-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.readStrandOrigin-0.0.2", "description": "The strand from which the read originates in a strand-specific protocol", + "type": "string", "anyOf": [ { "const": "forward", diff --git a/terms/ngs/runType.json b/terms/ngs/runType.json index fea4059d1..8d7164c28 100644 --- a/terms/ngs/runType.json +++ b/terms/ngs/runType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.runType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.runType-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "singleEnd", diff --git a/terms/ngs/sampleBarcode.json b/terms/ngs/sampleBarcode.json index e3066a695..5c27f7812 100644 --- a/terms/ngs/sampleBarcode.json +++ b/terms/ngs/sampleBarcode.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-ngs.sampleBarcode-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-ngs.sampleBarcode-0.0.2", "description": "The nucleotide sequence of the sample barcode used to identify cells from a single sample in cell hashing or multiplexing assays.", "type": "string", "minLength": 1, diff --git a/terms/qc/GQN.json b/terms/qc/GQN.json index f4659d5ab..e498a5be0 100644 --- a/terms/qc/GQN.json +++ b/terms/qc/GQN.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.GQN-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.GQN-0.0.2", "type": "number", "description": "Illumina gDNA quality score" } diff --git a/terms/qc/RIN.json b/terms/qc/RIN.json index aad1471bc..bc6b911f0 100644 --- a/terms/qc/RIN.json +++ b/terms/qc/RIN.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.RIN-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.RIN-0.0.2", "type": "number", "description": "RNA Integrity Number" } diff --git a/terms/qc/meanCoverage.json b/terms/qc/meanCoverage.json index 2d25b491e..15110697e 100644 --- a/terms/qc/meanCoverage.json +++ b/terms/qc/meanCoverage.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.meanCoverage-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.meanCoverage-0.0.2", "type": "number", "description": "Total number of bases covered by ATAC-seq reads/size of genome" } diff --git a/terms/qc/meanGCContent.json b/terms/qc/meanGCContent.json index 55d3e6eed..ef6912674 100644 --- a/terms/qc/meanGCContent.json +++ b/terms/qc/meanGCContent.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.meanGCContent-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.meanGCContent-0.0.2", "type": "number", "description": "Mean GC content per sample" } diff --git a/terms/qc/medianGenes.json b/terms/qc/medianGenes.json index 03a39ced2..456673b72 100644 --- a/terms/qc/medianGenes.json +++ b/terms/qc/medianGenes.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.medianGenes-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.medianGenes-0.0.2", "type": "number", "description": "The median number of genes detected (with nonzero UMI counts) across all cell-associated barcodes", "source": "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/output/gex-metrics" diff --git a/terms/qc/medianUMIs.json b/terms/qc/medianUMIs.json index 981288062..fbfe6ed1b 100644 --- a/terms/qc/medianUMIs.json +++ b/terms/qc/medianUMIs.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.medianUMIs-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.medianUMIs-0.0.2", "type": "number", "description": "The median number of total Unique Molecular Identifier (UMI) counts across all cell-associated barcodes", "source": "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/output/gex-metrics" diff --git a/terms/qc/organRIN.json b/terms/qc/organRIN.json index bd269b71e..bbe3cbcd5 100644 --- a/terms/qc/organRIN.json +++ b/terms/qc/organRIN.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.organRIN-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.organRIN-0.0.2", "type": "number", "description": "A general quality metric of the organ or tissue, not necessarily a direct RIN measure of the sample used in data generation" } diff --git a/terms/qc/ratio260over230.json b/terms/qc/ratio260over230.json index a58c512fc..0b1d84013 100644 --- a/terms/qc/ratio260over230.json +++ b/terms/qc/ratio260over230.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.ratio260over230-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.ratio260over230-0.0.2", "type": "number", "description": "Ratio of absorbance at 230 nm and 260 nm. Measures protein or other contaminants. Range up to approximately 2.2." } diff --git a/terms/qc/ratio260over280.json b/terms/qc/ratio260over280.json index a7034b531..a4fc75d7e 100644 --- a/terms/qc/ratio260over280.json +++ b/terms/qc/ratio260over280.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.ratio260over280-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.ratio260over280-0.0.2", "type": "number", "description": "Measure of DNA vs. RNA purity. Range up to approximately 2.0." } diff --git a/terms/qc/validBarcodeReads.json b/terms/qc/validBarcodeReads.json index 6c1845586..2dc24dc4e 100644 --- a/terms/qc/validBarcodeReads.json +++ b/terms/qc/validBarcodeReads.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.validBarcodeReads-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.validBarcodeReads-0.0.2", "type": "number", "description": "Fraction of reads with cell barcodes that match the whitelist", "source": "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/output/gex-metrics" diff --git a/terms/qc/validHiCContacts.json b/terms/qc/validHiCContacts.json index 241f4a7bd..dd9626c5f 100644 --- a/terms/qc/validHiCContacts.json +++ b/terms/qc/validHiCContacts.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema", - "$id": "sage.annotations-qc.validHiCContacts-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-qc.validHiCContacts-0.0.2", "type": "number", "description": "Percentage of reads as valid Hi-C interactions (QC metric)" } diff --git a/terms/sageCommunity/consortium.json b/terms/sageCommunity/consortium.json index 18dbdfdc1..aae92a7ea 100644 --- a/terms/sageCommunity/consortium.json +++ b/terms/sageCommunity/consortium.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-sageCommunity.consortium-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-sageCommunity.consortium-0.0.4", "description": "The name of the consortium", + "type": "string", "anyOf": [ { "const": "CMC", diff --git a/terms/sageCommunity/fileFormat.json b/terms/sageCommunity/fileFormat.json index 2336f1e42..0a789fc25 100644 --- a/terms/sageCommunity/fileFormat.json +++ b/terms/sageCommunity/fileFormat.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-sageCommunity.fileFormat-0.0.3", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-sageCommunity.fileFormat-0.0.4", "description": "Defined format of the data file, typically corresponding to extension, but sometimes indicating more general group of files produced by the same tool or software", + "type": "string", "anyOf": [ { "const": "Synapse Table", diff --git a/terms/sageCommunity/fundingAgency.json b/terms/sageCommunity/fundingAgency.json index faf695aeb..8ae818e3b 100644 --- a/terms/sageCommunity/fundingAgency.json +++ b/terms/sageCommunity/fundingAgency.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-sageCommunity.fundingAgency-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-sageCommunity.fundingAgency-0.0.2", "description": "The organization providing financial support for generation of this data.", + "type": "string", "anyOf": [ { "const": "CTF", diff --git a/terms/sageCommunity/group.json b/terms/sageCommunity/group.json index f22b798b3..e46f0d7d3 100644 --- a/terms/sageCommunity/group.json +++ b/terms/sageCommunity/group.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-sageCommunity.group-0.0.2", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-sageCommunity.group-0.0.3", "description": "", + "type": "string", "anyOf": [ { "const": "MSSM", diff --git a/terms/sageCommunity/resourceType.json b/terms/sageCommunity/resourceType.json index dc5811230..d32bb8b38 100644 --- a/terms/sageCommunity/resourceType.json +++ b/terms/sageCommunity/resourceType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-sageCommunity.resourceType-0.0.4", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-sageCommunity.resourceType-0.0.5", "description": "The type of resource being stored and annotated", + "type": "string", "anyOf": [ { "const": "analysis", diff --git a/terms/tool/inputDataType.json b/terms/tool/inputDataType.json index 508d6f901..4f3a6dd78 100644 --- a/terms/tool/inputDataType.json +++ b/terms/tool/inputDataType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.inputDataType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.inputDataType-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "genomicVariants", diff --git a/terms/tool/outputDataType.json b/terms/tool/outputDataType.json index 1e40802c5..3157a6e32 100644 --- a/terms/tool/outputDataType.json +++ b/terms/tool/outputDataType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.outputDataType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.outputDataType-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "genomicVariants", diff --git a/terms/tool/softwareAuthor.json b/terms/tool/softwareAuthor.json index fdba315fa..3ab542d19 100644 --- a/terms/tool/softwareAuthor.json +++ b/terms/tool/softwareAuthor.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareAuthor-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareAuthor-0.0.2", "description": "", "type": "string" } diff --git a/terms/tool/softwareLanguage.json b/terms/tool/softwareLanguage.json index d7c0954c2..06d745764 100644 --- a/terms/tool/softwareLanguage.json +++ b/terms/tool/softwareLanguage.json @@ -1,30 +1,31 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareLanguage-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareLanguage-0.0.2", "description": "", + "type": "string", "anyOf": [ { - "const": "R", + "const": "Java", "description": "", "source": "" }, { - "const": "Python", + "const": "Matlab", "description": "", "source": "" }, { - "const": "Matlab", + "const": "Python", "description": "", "source": "" }, { - "const": "Shell", + "const": "R", "description": "", "source": "" }, { - "const": "Java", + "const": "Shell", "description": "", "source": "" } diff --git a/terms/tool/softwareLanguageVersion.json b/terms/tool/softwareLanguageVersion.json index 8ad0a1475..a452d4cff 100644 --- a/terms/tool/softwareLanguageVersion.json +++ b/terms/tool/softwareLanguageVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareLanguageVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareLanguageVersion-0.0.2", "description": "", "type": "string" } diff --git a/terms/tool/softwareName.json b/terms/tool/softwareName.json index f35b76c12..fc341a497 100644 --- a/terms/tool/softwareName.json +++ b/terms/tool/softwareName.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareName-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareName-0.0.2", "description": "", "type": "string" } diff --git a/terms/tool/softwareRepository.json b/terms/tool/softwareRepository.json index 18f20c92b..12b329e59 100644 --- a/terms/tool/softwareRepository.json +++ b/terms/tool/softwareRepository.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareRepository-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareRepository-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "Synapse", diff --git a/terms/tool/softwareRepositoryType.json b/terms/tool/softwareRepositoryType.json index 80e50f8ef..701480d3d 100644 --- a/terms/tool/softwareRepositoryType.json +++ b/terms/tool/softwareRepositoryType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareRepositoryType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareRepositoryType-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "fileStore", diff --git a/terms/tool/softwareType.json b/terms/tool/softwareType.json index 14bd1530c..f505f83a1 100644 --- a/terms/tool/softwareType.json +++ b/terms/tool/softwareType.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareType-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareType-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "script", diff --git a/terms/tool/softwareVersion.json b/terms/tool/softwareVersion.json index 2f15798df..602c7f554 100644 --- a/terms/tool/softwareVersion.json +++ b/terms/tool/softwareVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-tool.softwareVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-tool.softwareVersion-0.0.2", "description": "", "type": "string" } diff --git a/terms/toolExtended/containerPlatform.json b/terms/toolExtended/containerPlatform.json index 208ad38b0..cd15ac1b1 100644 --- a/terms/toolExtended/containerPlatform.json +++ b/terms/toolExtended/containerPlatform.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.containerPlatform-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.containerPlatform-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "Docker", diff --git a/terms/toolExtended/containerPlatformVersion.json b/terms/toolExtended/containerPlatformVersion.json index ce7a84fb5..8ed734c58 100644 --- a/terms/toolExtended/containerPlatformVersion.json +++ b/terms/toolExtended/containerPlatformVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.containerPlatformVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.containerPlatformVersion-0.0.2", "description": "", "type": "string" } diff --git a/terms/toolExtended/containerToolPlatform.json b/terms/toolExtended/containerToolPlatform.json index 4d2de53e6..64a387985 100644 --- a/terms/toolExtended/containerToolPlatform.json +++ b/terms/toolExtended/containerToolPlatform.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.containerToolPlatform-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.containerToolPlatform-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "Docker-CWL", diff --git a/terms/toolExtended/packageBinaryPlatform.json b/terms/toolExtended/packageBinaryPlatform.json index 022451d68..3291829a9 100644 --- a/terms/toolExtended/packageBinaryPlatform.json +++ b/terms/toolExtended/packageBinaryPlatform.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.packageBinaryPlatform-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.packageBinaryPlatform-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "Windows", diff --git a/terms/toolExtended/packageBinaryPlatformVersion.json b/terms/toolExtended/packageBinaryPlatformVersion.json index 5851c5d82..91cebccc9 100644 --- a/terms/toolExtended/packageBinaryPlatformVersion.json +++ b/terms/toolExtended/packageBinaryPlatformVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.packageBinaryPlatformVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.packageBinaryPlatformVersion-0.0.2", "description": "", "type": "string" } diff --git a/terms/toolExtended/packageLibraryPlatformVersion.json b/terms/toolExtended/packageLibraryPlatformVersion.json index 1a3efed71..89479cbfd 100644 --- a/terms/toolExtended/packageLibraryPlatformVersion.json +++ b/terms/toolExtended/packageLibraryPlatformVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.packageLibraryPlatformVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.packageLibraryPlatformVersion-0.0.2", "description": "", "type": "string" } diff --git a/terms/toolExtended/workflowPlatform.json b/terms/toolExtended/workflowPlatform.json index 3c7b1dd11..2c27cc42d 100644 --- a/terms/toolExtended/workflowPlatform.json +++ b/terms/toolExtended/workflowPlatform.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.workflowPlatform-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.workflowPlatform-0.0.2", "description": "", + "type": "string", "anyOf": [ { "const": "Nextflow", diff --git a/terms/toolExtended/workflowPlatformVersion.json b/terms/toolExtended/workflowPlatformVersion.json index ade0d3306..7cf171a1c 100644 --- a/terms/toolExtended/workflowPlatformVersion.json +++ b/terms/toolExtended/workflowPlatformVersion.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "sage.annotations-toolExtended.workflowPlatformVersion-0.0.1", + "$id": "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/sage.annotations-toolExtended.workflowPlatformVersion-0.0.2", "description": "", "type": "string" }