From f651578c4c9753f73355a0625e219c0b63241024 Mon Sep 17 00:00:00 2001 From: jvfe Date: Sun, 31 Mar 2024 11:08:23 -0300 Subject: [PATCH] hotfix: Add skip_preprocess flag to schema Signed-off-by: jvfe --- docs/params.md | 1 + nextflow.config | 1 + nextflow_schema.json | 5 +++++ 3 files changed, 7 insertions(+) diff --git a/docs/params.md b/docs/params.md index 5a5571c..2ebdc22 100644 --- a/docs/params.md +++ b/docs/params.md @@ -25,6 +25,7 @@ Choose to skip pipeline steps | `skip_functional` | Skip functional annotation | `boolean` | | | | | `skip_host_removal` | Skip host removal | `boolean` | | | | | `skip_microview` | Skip MicroView report | `boolean` | | | | +| `skip_preprocess` | Skip Preprocessing steps | `boolean` | | | | ## Decontamination diff --git a/nextflow.config b/nextflow.config index 6227fcd..0de0656 100644 --- a/nextflow.config +++ b/nextflow.config @@ -43,6 +43,7 @@ params { maximum_evalue = 0.0001 // Skips + skip_preprocess = false skip_host_removal = false skip_classification = false skip_functional = false diff --git a/nextflow_schema.json b/nextflow_schema.json index 0488efe..f73504a 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -79,6 +79,11 @@ "type": "boolean", "fa_icon": "fas fa-glasses", "description": "Skip MicroView report" + }, + "skip_preprocess": { + "type": "boolean", + "description": "Skip Preprocessing steps", + "fa_icon": "fas fa-cut" } }, "fa_icon": "fas fa-angle-double-right"