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This repository was archived by the owner on Sep 1, 2021. It is now read-only.
Settings are missing for the next engines: ()
QStackedLayout::setCurrentWidget: Widget 0x945d50 not contained in stack
dev warning: Extension "GAMESS" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation.
dev warning: Extension "Orbitals" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation.
dev warning: Extension "Vibration" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation.
PreCalculate
Finished queue.
GLWidget initialisation...
GLWidget initialised...
createObjects()
libpng warning: Ignoring attempt to set cHRM RGB triangle with zero area
[Thread 0x7fffdedbf700 (LWP 26382) exited]
Program received signal SIGSEGV, Segmentation fault.
0x00007ffff62291e4 in OpenBabel::OBUnitCell::OBUnitCell (this=0x10d3b20, src=...) at /home/jmht/Documents/Avogadro/avogadro-squared/openbabel/src/generic.cpp:264
264 _lattice(src._lattice)
(gdb) bt
#0 0x00007ffff62291e4 in OpenBabel::OBUnitCell::OBUnitCell (this=0x10d3b20, src=...) at /home/jmht/Documents/Avogadro/avogadro-squared/openbabel/src/generic.cpp:264 #1 0x000000000043b197 in Avogadro::MainWindow::prepareClipboardData (this=0x8a8ba0, selectedItems=...)
at /home/jmht/Documents/Avogadro/avogadro-squared/avogadro/avogadro/src/mainwindow.cpp:2423
#2 0x000000000043bac3 in Avogadro::MainWindow::copy (this=0x8a8ba0) at /home/jmht/Documents/Avogadro/avogadro-squared/avogadro/avogadro/src/mainwindow.cpp:2495 #3 0x000000000043f3d5 in Avogadro::MainWindow::qt_static_metacall (_o=, _c=, _id=, _a=)
at /home/jmht/Documents/Avogadro/avogadro-squared/avogadro-build/avogadro/avogadro/src/mainwindow.moc:180
#4 0x00007ffff670c281 in QMetaObject::activate(QObject_, QMetaObject const_, int, void**) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #5 0x00007ffff6c14132 in QAction::triggered(bool) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #6 0x00007ffff6c1431f in QAction::activate(QAction::ActionEvent) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #7 0x00007ffff6711446 in QObject::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #8 0x00007ffff6c143f0 in QAction::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #9 0x00007ffff6c1a894 in QApplicationPrivate::notify_helper(QObject_, QEvent_) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #10 0x00007ffff6c1f713 in QApplication::notify(QObject_, QEvent_) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #11 0x00007ffff66f7e9c in QCoreApplication::notifyInternal(QObject_, QEvent_) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #12 0x00007ffff66fbc6a in QCoreApplicationPrivate::sendPostedEvents(QObject_, int, QThreadData_) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #13 0x00007ffff6726f93 in ?? () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #14 0x00007ffff4053d53 in g_main_context_dispatch () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #15 0x00007ffff40540a0 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #16 0x00007ffff4054164 in g_main_context_iteration () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #17 0x00007ffff67273bf in QEventDispatcherGlib::processEvents(QFlagsQEventLoop::ProcessEventsFlag) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #18 0x00007ffff6cc2d5e in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #19 0x00007ffff66f6c82 in QEventLoop::processEvents(QFlagsQEventLoop::ProcessEventsFlag) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #20 0x00007ffff66f6ed7 in QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #21 0x00007ffff66fbf67 in QCoreApplication::exec() () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #22 0x000000000041f20c in main (argc=1, argv=) at /home/jmht
To reproduce, draw a molecule (just click with the draw tool to draw methane).
Change to the select tool, select an atom, then go to the menu: Edit->Copy
Crash, with backtrace below.
This with a fresh build on Ubuntu with avogadro-squared, and the distribution Qt:
Application version: 1.1.0 Git revision d9e5d4f
OpenBabel: 2.3.90
Qt: 4.8.1
Settings are missing for the next engines: ()
QStackedLayout::setCurrentWidget: Widget 0x945d50 not contained in stack
dev warning: Extension "GAMESS" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation.
dev warning: Extension "Orbitals" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation.
dev warning: Extension "Vibration" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation.
PreCalculate
Finished queue.
GLWidget initialisation...
GLWidget initialised...
createObjects()
libpng warning: Ignoring attempt to set cHRM RGB triangle with zero area
[Thread 0x7fffdedbf700 (LWP 26382) exited]
Program received signal SIGSEGV, Segmentation fault.
0x00007ffff62291e4 in OpenBabel::OBUnitCell::OBUnitCell (this=0x10d3b20, src=...) at /home/jmht/Documents/Avogadro/avogadro-squared/openbabel/src/generic.cpp:264
264 _lattice(src._lattice)
(gdb) bt
#0 0x00007ffff62291e4 in OpenBabel::OBUnitCell::OBUnitCell (this=0x10d3b20, src=...) at /home/jmht/Documents/Avogadro/avogadro-squared/openbabel/src/generic.cpp:264
#1 0x000000000043b197 in Avogadro::MainWindow::prepareClipboardData (this=0x8a8ba0, selectedItems=...)
#2 0x000000000043bac3 in Avogadro::MainWindow::copy (this=0x8a8ba0) at /home/jmht/Documents/Avogadro/avogadro-squared/avogadro/avogadro/src/mainwindow.cpp:2495
#3 0x000000000043f3d5 in Avogadro::MainWindow::qt_static_metacall (_o=, _c=, _id=, _a=)
#4 0x00007ffff670c281 in QMetaObject::activate(QObject_, QMetaObject const_, int, void**) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#5 0x00007ffff6c14132 in QAction::triggered(bool) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4
#6 0x00007ffff6c1431f in QAction::activate(QAction::ActionEvent) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4
#7 0x00007ffff6711446 in QObject::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#8 0x00007ffff6c143f0 in QAction::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4
#9 0x00007ffff6c1a894 in QApplicationPrivate::notify_helper(QObject_, QEvent_) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4
#10 0x00007ffff6c1f713 in QApplication::notify(QObject_, QEvent_) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4
#11 0x00007ffff66f7e9c in QCoreApplication::notifyInternal(QObject_, QEvent_) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#12 0x00007ffff66fbc6a in QCoreApplicationPrivate::sendPostedEvents(QObject_, int, QThreadData_) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#13 0x00007ffff6726f93 in ?? () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#14 0x00007ffff4053d53 in g_main_context_dispatch () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#15 0x00007ffff40540a0 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#16 0x00007ffff4054164 in g_main_context_iteration () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#17 0x00007ffff67273bf in QEventDispatcherGlib::processEvents(QFlagsQEventLoop::ProcessEventsFlag) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#18 0x00007ffff6cc2d5e in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4
#19 0x00007ffff66f6c82 in QEventLoop::processEvents(QFlagsQEventLoop::ProcessEventsFlag) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#20 0x00007ffff66f6ed7 in QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#21 0x00007ffff66fbf67 in QCoreApplication::exec() () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4
#22 0x000000000041f20c in main (argc=1, argv=) at /home/jmht
/Documents/Avogadro/avogadro-squared/avogadro/avogadro/src/main.cpp:251
Reported by: jensthomas
The text was updated successfully, but these errors were encountered: