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Finding unique k-mer #28

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yliasolom opened this issue Dec 8, 2022 · 0 comments
Open

Finding unique k-mer #28

yliasolom opened this issue Dec 8, 2022 · 0 comments

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@yliasolom
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maybe it would be a little silly question, sorry but I am new in bioinformatic. Could you please explain if I have a file with clusters of transposons:

For example: >RLC_02.01.01.05.99_LTR_AVESA_chr13_1474_chr7A_311197774_311206040|RLC_02.01.01.05.99_LTR_AVESA_chr13_1474_chr2A_237772346_237781533|1871
TTATTTTGCATGCTATAATTGTATTAATACGGAAACGTTAATACATGTGTGTTTAATAAACAAACAGAAAGTTCCTAGTTAAGCCTCTCTCATAAACTAGCTCGTTGATTAACAAGATGATCAAGGTTTCCTGATCATGGACATTGGATGTTGTTAATAACGGGATCACAACATTAGTGTAATGATGTGATGAACATTCATCCGAAGTATAGCATTACGATCAAAGTCATTGAGTTTATATTGCTATAACAACTTACGAAGTGATCCTAATCCTTAGACCATGAGATCATGTCAATCACTAACACCGGAAGAGTTTCTTGATAACATCAAACGTCACACCGTAACAGGGTGATTATAAAGATGGATTCAGAACTAATAAAGTGTTATGTTGAGGCTCATGGATCGAGAGTGGAATTTGTTCATCCCGATGACGGATAGATATACTCTGGGCCCTCTCGGTGATATCACATTGATTAGCTTGCAAGCAAGTGATTTGATCACTAGAATGTTATATCACAGGAACGAGAAAAGAGTGCATGTCGGTAACGAGATCAAACTAGGTATGGAGATACCGATGATCGAATCTCGGACATGTAATATATCGTGAAACAAAGGGATTAAGATACTAGCGTAAAAGGTTCCGACGATCACAAGAAAGTCATCGTTGAATGTGTGGGAGTCAGTATGGGTCTCCAGATCCCGCTTCTGATTATTGATCTGAG

How can I implement your tool to find a unique k-mer with length 23 in this sequence?

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