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Improvements automatic instance segmentation #417

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4 tasks done

constantinpape opened this issue Mar 8, 2024 · 1 comment

Closed

4 tasks done

Improvements automatic instance segmentation #417

constantinpape opened this issue Mar 8, 2024 · 1 comment

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constantinpape commented Mar 8, 2024 •

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Follow up tasks to #305

Load the decoder from published finetuned models, pending Bioimageio Model Creation #227 to bring models to the zoo.
Expose more parameters for instance segmentation from decoder, revisit default value for smoothing (we still see some artifacts).
Implement 3d post-processing to merge across small missing gaps in z.
Improve AMG for overlapping objects, see Artifactual Segmentation "Rings" after Automatic Segmentation (2D) #416

constantinpape added this to the 0.5.0 milestone

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constantinpape commented Mar 19, 2024

Fixed by #462.

constantinpape closed this as completed

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