Suggestion for enhancement: table summarizing qc and preprocessing statistics

[apeleraux]

It would be very useful to include in the pipeline the generation of a table summarizing, for every sample, the number of cells recovered, the total number of reads, the average number of reads per cell, the average number of expressed genes, the percentage of mitochondrial and ribosomal genes (pre- and post-preprocessing). The number of aligned reads per sample is present in the summary table of the multiQC report. The other values are present separately for each sample in the 1_preprocessing/4_pre_vs_post_stats.tsv files. Of course, this summary table should be included in the report.