-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html
executable file
·68 lines (62 loc) · 4.7 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
<!DOCTYPE.html>
<html>
<head>
<title>Cytogenetics, FISH, and Molecular Resources for Cytogeneticists</title>
<style>
body {
background-color: #ddffcc;
}
</style>
</head>
<body>
<h2>Cytogenetics, FISH, and Molecular Resources for Cytogeneticists</h2>
<h4>Christopher Mixon, M.D., Medical Director, NeoGenomics Laboratories, Nashville, TN</h4>
<h4>ISCN Resources</h4>
<ul>
<li><a target="_blank" href="html_files/iscn_writer.html">ISCN Writer</a><span> (for interphase FISH)</span></li>
<li><a target="_blank" href="data/complete_nr.txt">Complete Examples from ISCN(2020)</a></li>
<li><a target="_blank" href="html_files/glossary.html">Glossary of ISCN Terms and Symbols</a></li>
<li><a target="_blank" href="html_files/karyotype_comparator_bkps.html">Karyotype Comparator</a><span> (compare and proofread current ISCN)</span></li>
</ul>
<h4>Databases (see below for source credits)</h4>
<ul>
<li><a target="_blank" href="html_files/Fragile_sites_bed.html">Fragile Sites (click button on page to display)</a></li>
<li><a target="_blank" href="Cytogenetics_Heme.html">Cytogenetics of Hematologic Malignancies (Atlas Database)</a></li>
<li><a target = "_blank" href="data/dz_bkpts.txt">Disease associations breakpoints, mostly heme (Atlas Database)</a></li>
<li><a target = "_blank" href="data/softTissue_bkps.txt">Soft tissue tumor breakpoints (Atlas Database)</a></li>
<li><a target = "_blank" href="data/dz_bkpts_master.txt">Disease breakpoints, master list (Atlas Database)</a></li>
<li><a target = "_blank" href="data/fusions_morph.txt">Gene fusions (Mitelman Database)</a></li>
<li><a target = "_blank" href="data/morphdata.txt">Rearrangements and disease associations (Mitelman Database)</a></li>
</ul>
<h4>Idiograms of FISH and Molecular Probes</h4
<p>The links below use idiograms to show chromosome location for each probe in its respective NeoGenomics test group and to provide reference information and external links for more information about each gene. Use the searchable <a target="_blank" href="data/genes.txt">Gene List file</a> to locate a gene of interest.</p>
<ul>
<li><a target="_blank" href="html_files/FISH_all_tests.html">FISH Probes</a> (Heme and Solid Tumor)</li>
<li><a target="_blank" href="html_files/myeloid_disorders_molecular.html">Myeloid Molecular</a> (Includes Myeloid Disorders, MDS/CMML, and AML Prognostic Profiles)</li>
<li><a target="_blank" href="html_files/ALL_fusions_molecular.html">ALL fusion molecular</a></li>
<li><a target="_blank" href="html_files/lymphoid_molecular.html">Lymphoma molecular</a></li>
<li><a target="_blank" href="html_files/GIST_soft_tissue.html">GIST and Solid tumor molecular</a></li>
<li><a target="_blank" href="html_files/sarcoma_molecular.html">Sarcoma molecular</a></li>
<li><a target="_blank" href="html_files/oncomine_dx.html">OncomineDx</a></li>
<li><a target="_blank" href="html_files/ngs_non_heme.html">NGS Non-Heme</a></li>
</ul>
<h4>Smart Report Builders for Heme Fish</h4>
<ul>
<li><a target="_blank" href="html_files/myeloma_interp.html">Multiple Myeloma Smart report</a></li>
<li><a target="_blank" href="html_files/myeloid.html">Myeloid Smart report</a></li>
<li><a target="_blank" href="html_files/lymphoma.html">Lymphoma Smart report</a></li>
<li><a target="_blank" href="html_files/all.html">Acute Lymphoblastic Leukemia Smart report</a></li>
</ul>
<h4>FISH Report Builders (legacy)</h4>
<ul>
<li><a target="_blank" href="html_files/myeloma_combined_v5.html">Report builder for Multiple Myeloma FISH reports</a></li>
<li><a target="_blank" href="html_files/myeloma_combined_v5_input_mod.html">Report builder for Multiple Myeloma FISH reports (inputs)</a></li>
<li><a target="_blank" href="html_files/cll_new_approach.html">Report builder for CLL FISH reports</a></li>
<li><a target="_blank" href="html_files/cll_new_approach_input_mod.html">Report builder for CLL FISH reports (inputs)</a></li>
<li><a target="_blank" href="html_files/aml_combined.html">Report builder for AML FISH reports</a></li>
<li><a target="_blank" href="html_files/mds.html">Report builder for MDS FISH reports</a></li>
</ul>
<p>The fragile site databse is a modification of the BED file from <a target="_blank" href="https://webs.iiitd.edu.in/raghava/humcfs/">HumCFS: A Database of Human Chromosomal Fragile Sites.</a> The Atlas Database is taken from the "anom_bandall.txt" file previously available at <a target="_blank" href="https://atlasgeneticsoncology.org">atlasgeneticsoncology.org</a>. It is no longer posted, a great omission in my opinion.</p>
<p>The Idiograms use the IdeogramJS library developed by Eric Weitz. Additional information is available at his <a target="_blank" href="html_files/https://github.com/eweitz/ideogram">GitHub repository.</a></p>
</body>
<html>