notebooktest-package.yml

name: Notebooks

on: [push]

jobs:
  build:
    runs-on: ubuntu-latest

    steps:
      # This cancels any such job that is still running
      - name: Cancel Previous Runs
        uses: styfle/cancel-workflow-action@0.6.0
        with:
          access_token: ${{ github.token }}
      - uses: actions/checkout@v2
      - name: Set up Python 3.10
        uses: actions/setup-python@v1
        with:
          python-version: 3.10
      - name: Install graphviz
        run: |
          sudo apt-get install -y graphviz graphviz-dev
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install pathos pygraphviz neuron cloud-volume k3d scikit-image open3d
          python -m pip install -e .[test-notebook]
      - name: Run notebooks
        env:
          NEUPRINT_APPLICATION_CREDENTIALS: ${{ secrets.neuprint }}
          INSECT_BRAIN_DB_USER: ${{ secrets.insect_brain_db_user }}
          INSECT_BRAIN_DB_PASSWORD: ${{ secrets.insect_brain_db_password }}
        run: |
          python tests/test_notebooks.py