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HEP Tools

Documentation Docker Image Python Version Code Style

A collection of tools for experimental high energy physics analysis.

Installation

Conda (recommend Mamba for performance)

Create an environment

mamba env create -f https://raw.githubusercontent.com/chuyuanliu/heptools/master/environment.yml
conda activate heptools-dev

Install without dependencies

pip install --no-dependencies git+https://github.com/chuyuanliu/heptools.git@master

pip

Install all denpendencies with pip

pip install git+https://github.com/chuyuanliu/heptools.git@master

Run in container

A docker image will be automatically built and pushed to docker hub when a new commit is pushed to master branch.

Run an ineractive shell with Singularity(Apptainer)

singularity exec -B .:/srv -B /cvmfs --pwd /srv ${HEPTOOLS_DOCKER_IMAGE} bash --init-file /entrypoint.sh

use image from docker hub

export HEPTOOLS_DOCKER_IMAGE="docker://chuyuanliu/heptools:latest"

use image from unpacked.cern.ch (recommended)

export HEPTOOLS_DOCKER_IMAGE="/cvmfs/unpacked.cern.ch/registry.hub.docker.com/chuyuanliu/heptools:latest"

Submit jobs to batch system with HTCondor

LPC

Create X.509 proxy. (stored in ${X509_USER_PROXY})

voms-proxy-init --rfc --voms cms -valid 192:00

Setup condor configuration. (stored in ${CONDOR_CONFIG}$)

source <(curl -s https://raw.githubusercontent.com/chuyuanliu/heptools/master/tools/condor_config_lpc.sh) [<schedd_name>]

If <schedd_name> is provided, the default SCHEDD_HOST will be replaced. (check schedd status condor_status -schedd)

Start a container

singularity exec -B .:/srv -B /cvmfs -B /uscmst1b_scratch/lpc1 -B $(readlink ${HOME}/nobackup) --env "CONDOR_CONFIG=${CONDOR_CONFIG}" --pwd /srv ${HEPTOOLS_DOCKER_IMAGE} bash --init-file /entrypoint.sh

Tips

  • To change singularity (apptainer) cache and temp dir
export APPTAINER_CACHEDIR="new/path/to/cache/"
export APPTAINER_TMPDIR="new/path/to/tmp/"
  • To run ml container in wsl:
singularity exec -B .:/srv -B /run/shm --nvccli --pwd /srv ${HEPTOOLS_DOCKER_IMAGE} bash --init-file /entrypoint.sh

TODO

  • check: use TYPE_CHECKING to avoid circular import, unused import
  • add:hist utils
  • rewrite: XSection
  • doc
  • comment
  • unit test