From d70379dc20bc32991f3bbf03630de9342510be8b Mon Sep 17 00:00:00 2001
From: Lucia Reynoso <lreynoso@chanzuckerberg.com>
Date: Mon, 13 May 2024 13:21:06 -0700
Subject: [PATCH] Output spades log in RunSpades (#359)

---
 workflows/amr/run.wdl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/workflows/amr/run.wdl b/workflows/amr/run.wdl
index 53a1d9c37..30862978d 100644
--- a/workflows/amr/run.wdl
+++ b/workflows/amr/run.wdl
@@ -641,6 +641,7 @@ task RunSpades {
     output { 
         File contigs = "spades/contigs.fasta"
         File? scaffolds = "spades/scaffolds.fasta"
+        File? spades_output_log = "spades/spades.log"
         File? failure_log = "spades_failure.json"
     }
     runtime {