diff --git a/workflows/amr/run.wdl b/workflows/amr/run.wdl index 53a1d9c37..30862978d 100644 --- a/workflows/amr/run.wdl +++ b/workflows/amr/run.wdl @@ -641,6 +641,7 @@ task RunSpades { output { File contigs = "spades/contigs.fasta" File? scaffolds = "spades/scaffolds.fasta" + File? spades_output_log = "spades/spades.log" File? failure_log = "spades_failure.json" } runtime {