From d9889db3338afb290d553ef42526161191b8f646 Mon Sep 17 00:00:00 2001 From: Isaac Virshup Date: Tue, 28 Jan 2025 22:41:26 +0000 Subject: [PATCH] Fix import from earlier anndata --- .../src/cellxgene_census_builder/build_soma/validate_soma.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/validate_soma.py b/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/validate_soma.py index 7ce035e61..7f56a24c6 100644 --- a/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/validate_soma.py +++ b/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/validate_soma.py @@ -545,7 +545,7 @@ def validate_X_layers_presence( def _read_var_names(path: str) -> npt.NDArray[np.object_]: import h5py - from anndata.io import read_elem + from anndata.experimental import read_elem with h5py.File(path) as f: index_key = f["var"].attrs["_index"]