diff --git a/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/experiment_builder.py b/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/experiment_builder.py index 69a2bcfcd..9f0411b7f 100644 --- a/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/experiment_builder.py +++ b/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/experiment_builder.py @@ -52,10 +52,8 @@ @attrs.define class PresenceResult: - dataset_id: str dataset_soma_joinid: int eb_name: str - data: npt.NDArray[np.bool_] cols: npt.NDArray[np.int64] @@ -67,10 +65,6 @@ class AxisStats: var_stats: pd.DataFrame -AccumulateXResult = tuple[PresenceResult, AxisStats] -AccumulateXResults = Sequence[AccumulateXResult] - - def _assert_open_for_write(obj: somacore.SOMAObject | None) -> None: assert obj is not None assert obj.exists(obj.uri) @@ -460,10 +454,8 @@ def compute_X_file_stats( var_stats["n_measured_obs"] = n_obs res["presence"].append( PresenceResult( - dataset_id, dataset_soma_joinid, eb_name, - (var_stats.nnz > 0).to_numpy(), var_stats.index.to_numpy(), ), )