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docker-compose.yml
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version: "3"
services:
blast:
image: ncbi/blast:2.10.0
container_name: "cabana_tutorial_2--blast"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
bmtagger:
image: cabanaonline/bmtagger:1.0
container_name: "cabana_tutorial_2--bmtagger"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
checkm:
image: cabanaonline/checkm:1.0
container_name: "cabana_tutorial_2--checkm"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
enveomics:
image: cabanaonline/enveomics:1.0
container_name: "cabana_tutorial_2--enveomics"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
fastqc:
image: cabanaonline/fastqc:1.0
container_name: "cabana_tutorial_2--fastqc"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
mash:
image: cabanaonline/mash:1.0
container_name: "cabana_tutorial_2--mash"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
maxbin2:
image: cabanaonline/maxbin2:1.0
container_name: "cabana_tutorial_2--maxbin2"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
megahit:
image: cabanaonline/megahit:1.0
container_name: "cabana_tutorial_2--megahit"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
metaphlan2:
image: cabanaonline/metaphlan2:1.0
container_name: "cabana_tutorial_2--metaphlan2"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
multiqc:
image: cabanaonline/multiqc:1.0
container_name: "cabana_tutorial_2--multiqc"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
seqtk:
image: cabanaonline/seqtk:1.0
container_name: "cabana_tutorial_2--seqtk"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
trimmomatic:
image: cabanaonline/trimmomatic:1.0
container_name: "cabana_tutorial_2--trimmomatic"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
r:
image: cabanaonline/r-env:1.0
container_name: "cabana_tutorial_2--r"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]
# Stamp is no longer being used due to the complications it has due to the GUI integration and
# difficulties getting it to work properly. It also uses a no longer supported version of Python.
# stamp:
# image: cabanaonline/stamp:1.0
# container_name: "cabana_tutorial_2--stamp"
# volumes:
# - $HOME/.Xauthority:$HOME/.Xauthority
# - /tmp/.X11-unix:/tmp/.X11-unix
# - ./scripts:/home/cabana/scripts:cached
# - ./CABANA:/home/cabana/CABANA:cached
# - ./DATA:/home/cabana/data:cached
# entrypoint: ["tail", "-f", "/dev/null"]
humman2:
image: cabanaonline/humann2:1.0
container_name: "cabana_tutorial_2--humann2"
volumes:
- ./scripts:/home/cabana/scripts:cached
- ./CABANA:/home/cabana/CABANA:cached
- ./DATA:/home/cabana/data:cached
entrypoint: ["tail", "-f", "/dev/null"]