forked from LorenFrankLab/franklabnwb
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathbeans20190718_metadata.yml
454 lines (429 loc) · 7.88 KB
/
beans20190718_metadata.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
experimenter_name: Alison Comrie
lab: Loren Frank
institution: University of California, San Francisco
experiment_description: Reinforcement learning
session_description: Reinforcement leaarning
session_id: beans_01
subject:
description: Long Evans Rat
genotype: Wild Type
sex: Male
species: Rat
subject_id: Beans
weight: Unknown
data_acq_device:
- system: SpikeGadgets
amplifier: Intan
adc_circuit: Intan
associated_files:
- name: statescript_r1
description: state script log run 1
path: /stelmo/loren/beans/raw/20190718/20190718_beans_02_r1.stateScriptLog
task_epochs:
- 2
- name: statescript_r2
description: state script log run 2
path: /stelmo/loren/beans/raw/20190718/20190718_beans_04_r2.stateScriptLog
task_epochs:
- 4
device:
name:
- Trodes
units:
analog: 'unspecified'
behavioral_events: 'unspecified'
times_period_multiplier: 1.5
# A/D units to volts: 0.195 uV / lsb
raw_data_to_volts : 0.000000195
default_header_file_path: default_header.xml
cameras:
- id: 0
meters_per_pixel: 0.00055
manufacturer: unknown
model: unknown
lens: unknown
camera_name: beans sleep camera
- id: 1
meters_per_pixel: 0.002
manufacturer: unknown2
model: unknown2
lens: unknown2
camera_name: beans run camera
tasks:
- task_name: Sleep
task_description: The animal sleeps in a small empty box
camera_id:
- 0
task_epochs:
- 1
- 3
- task_name: Stem+Leaf
task_description: Spatial Bandit
camera_id:
- 1
task_epochs:
- 2
- 4
associated_video_files:
- name: 20190718_beans_01_s1.1.h264
camera_id : 0
task_epoch: 1
- name: 20190718_beans_02_r1.1.h264
camera_id : 1
task_epoch: 2
- name: 20190718_beans_03_s2.1.h264
camera_id : 0
task_epoch: 3
- name: 20190718_beans_04_r2.1.h264
camera_id : 1
task_epoch: 4
behavioral_events:
- description: Din1
name: Poke1
- description: Din2
name: Poke2
- description: Din3
name: Poke3
- description: Din4
name: Poke4
- description: Din5
name: Poke5
- description: Din6
name: Poke6
- description: Din13
name: Camera_Ticks
- description: Dout1
name: Light1
- description: Dout2
name: Light2
- description: Dout3
name: Light3
- description: Dout4
name: Light4
- description: Dout5
name: Light5
- description: Dout6
name: Light6
- description: Dout7
name: Pump1
- description: Dout8
name: Pump2
- description: Dout9
name: Pump3
- description: Dout10
name: Pump4
- description: Dout11
name: Pump5
- description: Dout12
name: Pump6
#Important note: right now the code assumes that the electrode groups listed below (each of which corresponds to one or more NTrodes in the file)
# are in ascending order by NTrode number. If this is not the case the data could be scrambled. Thus, the first listed electrode group should correspond to,
# for example, NTrode 1-4 while the second would correspond to NTrode 5-8, etc.
electrode_groups:
- id: 0
location: mPFC
device_type: 128c-4s8mm6cm-20um-40um-sl
description: 'Probe 1'
targeted_location: 'mPFC'
targeted_x: 0.0
targeted_y: 0.0
targeted_z: 0.0
units: 'um'
- id: 1
location: mPFC
device_type: 128c-4s8mm6cm-20um-40um-sl
description: 'Probe 2'
targeted_location: 'mPFC'
targeted_x: 0.0
targeted_y: 0.0
targeted_z: 0.0
units: 'um'
ntrode_electrode_group_channel_map:
- ntrode_id: 1
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 0
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
10: 10
11: 11
12: 12
13: 13
14: 14
15: 15
16: 16
17: 17
18: 18
19: 19
20: 20
21: 21
22: 22
23: 23
24: 24
25: 25
26: 26
27: 27
28: 28
29: 29
30: 30
31: 31
- ntrode_id: 2
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 32
1: 33
2: 34
3: 35
4: 36
5: 37
6: 38
7: 39
8: 40
9: 41
10: 42
11: 43
12: 44
13: 45
14: 46
15: 47
16: 48
17: 49
18: 50
19: 51
20: 52
21: 53
22: 54
23: 55
24: 56
25: 57
26: 58
27: 59
28: 60
29: 61
30: 62
31: 63
- ntrode_id: 3
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 64
1: 65
2: 66
3: 67
4: 68
5: 69
6: 70
7: 71
8: 72
9: 73
10: 74
11: 75
12: 76
13: 77
14: 78
15: 79
16: 80
17: 81
18: 82
19: 83
20: 84
21: 85
22: 86
23: 87
24: 88
25: 89
26: 90
27: 91
28: 92
29: 93
30: 94
31: 95
- ntrode_id: 4
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 96
1: 97
2: 98
3: 99
4: 100
5: 101
6: 102
7: 103
8: 104
9: 105
10: 106
11: 107
12: 108
13: 109
14: 110
15: 111
16: 112
17: 113
18: 114
19: 115
20: 116
21: 117
22: 118
23: 119
24: 120
25: 121
26: 122
27: 123
28: 124
29: 125
30: 126
31: 127
- ntrode_id: 5
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #but they all look like they've got basically nothing to me - recall the Dow Corning issues!
map:
0: 0
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
10: 10
11: 11
12: 12
13: 13
14: 14
15: 15
16: 16
17: 17
18: 18
19: 19
20: 20
21: 21
22: 22
23: 23
24: 24
25: 25
26: 26
27: 27
28: 28
29: 29
30: 30
31: 31
- ntrode_id: 6
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #but they all look like they've got basically nothing to me - recall the Dow Corning issues!
map:
0: 32
1: 33
2: 34
3: 35
4: 36
5: 37
6: 38
7: 39
8: 40
9: 41
10: 42
11: 43
12: 44
13: 45
14: 46
15: 47
16: 48
17: 49
18: 50
19: 51
20: 52
21: 53
22: 54
23: 55
24: 56
25: 57
26: 58
27: 59
28: 60
29: 61
30: 62
31: 63
- ntrode_id: 7
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #also questionable - see rec
map:
0: 64
1: 65
2: 66
3: 67
4: 68
5: 69
6: 70
7: 71
8: 72
9: 73
10: 74
11: 75
12: 76
13: 77
14: 78
15: 79
16: 80
17: 81
18: 82
19: 83
20: 84
21: 85
22: 86
23: 87
24: 88
25: 89
26: 90
27: 91
28: 92
29: 93
30: 94
31: 95
- ntrode_id: 8
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #also questionable - see rec
map:
0: 96
1: 97
2: 98
3: 99
4: 100
5: 101
6: 102
7: 103
8: 104
9: 105
10: 106
11: 107
12: 108
13: 109
14: 110
15: 111
16: 112
17: 113
18: 114
19: 115
20: 116
21: 117
22: 118
23: 119
24: 120
25: 121
26: 122
27: 123
28: 124
29: 125
30: 126
31: 127