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java with conda install #9063

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stuartwillis opened this issue Dec 19, 2024 · 0 comments

stuartwillis commented Dec 19, 2024 •

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Please add java to the yaml file distributed through GitHub for conda installation (e.g. openjdk=17). It is after all a dependency of gatk...

Really, that should go for samtools, bedtools, and any of the other tools referred up or downstream in the GATK workflows.

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