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Project 5: Visualizing derby databases

  • Lead: Tooba Abbassi-Daloii

Description

The BridgeDb project is collecting data to create secondary to primary mapping databases for HGNC, UniProt, HMDB, ChEBI and Wikidata. Scripts can be found here.

Problem

The secondary to primary mapping file for HGNC contains incorrect mappings. To visualize the issue, visualization tools were attempted, but the correct drivers couldn't be defined using DBeaver.

Participants

Solution

The problem was solved by decompressing the BridgeDB derby files, as explained here