From a1d07e45b7d227f94efaacd0f66cdf57c955e5ce Mon Sep 17 00:00:00 2001 From: caufieldjh Date: Mon, 13 May 2024 15:51:35 -0400 Subject: [PATCH 1/2] Add use_conditions slot to DataStandardOrTool --- .../standards_datastandardortool_schema.yaml | 23 +++++++++++++------ 1 file changed, 16 insertions(+), 7 deletions(-) diff --git a/src/standards_schemas/schema/standards_datastandardortool_schema.yaml b/src/standards_schemas/schema/standards_datastandardortool_schema.yaml index abd2f4e..26d1fee 100644 --- a/src/standards_schemas/schema/standards_datastandardortool_schema.yaml +++ b/src/standards_schemas/schema/standards_datastandardortool_schema.yaml @@ -71,7 +71,7 @@ classes: A set of concepts and categories, potentially defined or accompanied by their hierarchical relationships. - + ModelRepository: is_a: DataStandardOrTool description: >- @@ -86,7 +86,7 @@ classes: Represents a resource in the Bridge2AI Standards Registry serving as a standardized, reusable data source. - + SoftwareOrTool: is_a: DataStandardOrTool description: >- @@ -122,20 +122,30 @@ slots: description: >- Tags for specific sets of standards. multivalued: true - + purpose_detail: range: string is_a: node_property description: >- Text description of the standard or tool. - + is_open: is_a: node_property range: boolean description: >- Is the standard or tool FAIR and available free of cost? - + + use_conditions: + is_a: node_property + range: uriorcurie + multivalued: true + values_from: + - DUO + description: >- + Applicable conditions on use, as defined + by the Data Use Ontology (DUO). + requires_registration: is_a: node_property range: boolean @@ -151,7 +161,7 @@ slots: in the context of object data topic. domain: DataStandardOrTool range: DataTopic - + publication: is_a: node_property range: uriorcurie @@ -261,4 +271,3 @@ enums: description: Speech Data standardsregistry: description: Standards Registry - From c9ec230d11a60bfd62328a2daf4b730c04da265e Mon Sep 17 00:00:00 2001 From: caufieldjh Date: Mon, 13 May 2024 15:54:36 -0400 Subject: [PATCH 2/2] Update project artifacts --- docs/index.md | 1 + docs/node_property.md | 1 + docs/use_conditions.md | 66 + project/docs/node_property.md | 1 + project/docs/standards_schema_all.md | 4 + project/docs/types/Jsonpath.md | 12 + project/docs/types/Jsonpointer.md | 12 + project/docs/types/Objectidentifier.md | 2 +- project/docs/types/Sparqlpath.md | 12 + project/docs/use_conditions.md | 22 + project/excel/standards_schema_all.xlsx | Bin 20947 -> 20949 bytes .../standards_schema_all.context.jsonld | 6 +- project/jsonld/standards_schema_all.jsonld | 115 +- project/owl/standards_schema_all.owl.ttl | 149 +- project/shacl/standards_schema_all.shacl.ttl | 1402 ++++++++--------- project/shex/standards_schema_all.shex | 8 +- .../datamodel/standards_schema_all.py | 5 +- 17 files changed, 1038 insertions(+), 780 deletions(-) create mode 100644 docs/use_conditions.md create mode 100644 project/docs/types/Jsonpath.md create mode 100644 project/docs/types/Jsonpointer.md create mode 100644 project/docs/types/Sparqlpath.md create mode 100644 project/docs/use_conditions.md diff --git a/docs/index.md b/docs/index.md index 8aa89b8..848afe8 100644 --- a/docs/index.md +++ b/docs/index.md @@ -84,6 +84,7 @@ Name: standards-schema-all | [url](url.md) | URL for basic documentation of the standard or tool | | [use_case_category](use_case_category.md) | Category of the UseCase | | [use_cases](use_cases.md) | Collection of associated use cases | +| [use_conditions](use_conditions.md) | Applicable conditions on use, as defined by the Data Use Ontology (DUO) | | [wikidata_id](wikidata_id.md) | Unique Wikidata identifier | | [xref](xref.md) | URI of corresponding class in an ontology of experimental procedures, in CURI... | diff --git a/docs/node_property.md b/docs/node_property.md index 6ba1bfa..da280ef 100644 --- a/docs/node_property.md +++ b/docs/node_property.md @@ -23,6 +23,7 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:node_property](https://w3 * [collection](collection.md) * [purpose_detail](purpose_detail.md) * [is_open](is_open.md) + * [use_conditions](use_conditions.md) * [requires_registration](requires_registration.md) * [publication](publication.md) * [formal_specification](formal_specification.md) diff --git a/docs/use_conditions.md b/docs/use_conditions.md new file mode 100644 index 0000000..cb568bc --- /dev/null +++ b/docs/use_conditions.md @@ -0,0 +1,66 @@ +# Slot: use_conditions +_Applicable conditions on use, as defined by the Data Use Ontology (DUO)._ + + +URI: [https://w3id.org/bridge2ai/standards-schema-all/:use_conditions](https://w3id.org/bridge2ai/standards-schema-all/:use_conditions) + + + + +## Inheritance + +* [node_property](node_property.md) + * **use_conditions** + + + + + + + +## Properties + +* Range: [Uriorcurie](Uriorcurie.md) +* Multivalued: True + + + + + + + + +## Identifier and Mapping Information + + + + + + + +### Schema Source + + +* from schema: https://w3id.org/bridge2ai/standards-schema-all + + + + +## LinkML Source + +
+```yaml +name: use_conditions +description: Applicable conditions on use, as defined by the Data Use Ontology (DUO). +from_schema: https://w3id.org/bridge2ai/standards-schema-all +rank: 1000 +is_a: node_property +values_from: +- DUO +domain: NamedThing +multivalued: true +alias: use_conditions +range: uriorcurie + +``` +
\ No newline at end of file diff --git a/project/docs/node_property.md b/project/docs/node_property.md index 0d681ab..34462db 100644 --- a/project/docs/node_property.md +++ b/project/docs/node_property.md @@ -41,6 +41,7 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/node_property](https://w3i * [standards_and_tools_for_dgp_use](standards_and_tools_for_dgp_use.md) * [url](url.md) * [use_case_category](use_case_category.md) + * [use_conditions](use_conditions.md) * [xref](xref.md) ## Used by diff --git a/project/docs/standards_schema_all.md b/project/docs/standards_schema_all.md index c449c45..2e7f7ef 100644 --- a/project/docs/standards_schema_all.md +++ b/project/docs/standards_schema_all.md @@ -75,6 +75,7 @@ High-level classes for Bridge2AI Standards schemas. * [url](url.md) - URL for basic documentation of the standard or tool. * [use_case_category](use_case_category.md) - Category of the UseCase. Not all projects will incorporate use cases in all categories. * [UseCaseāžžuse_case_category](UseCase_use_case_category.md) + * [use_conditions](use_conditions.md) - Applicable conditions on use, as defined by the Data Use Ontology (DUO). * [xref](xref.md) - URI of corresponding class in an ontology of experimental procedures, in CURIE form. * [organizations](organizations.md) - Collection of associated organizations. * [related_to](related_to.md) - A relationship that is asserted between two named things. @@ -131,12 +132,15 @@ High-level classes for Bridge2AI Standards schemas. * [EdamIdentifier](types/EdamIdentifier.md) ([Uriorcurie](types/Uriorcurie.md)) - Identifier from EDAM ontology * [Float](types/Float.md) (**float**) - A real number that conforms to the xsd:float specification * [Integer](types/Integer.md) (**int**) - An integer + * [Jsonpath](types/Jsonpath.md) (**str**) - A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. + * [Jsonpointer](types/Jsonpointer.md) (**str**) - A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. * [MeshIdentifier](types/MeshIdentifier.md) ([Uriorcurie](types/Uriorcurie.md)) - Identifier from Medical Subject Headings (MeSH) biomedical vocabulary. * [NcitIdentifier](types/NcitIdentifier.md) ([Uriorcurie](types/Uriorcurie.md)) - Identifier from NCIT reference terminology with broad coverage of the cancer domain. * [Ncname](types/Ncname.md) (**NCName**) - Prefix part of CURIE * [Nodeidentifier](types/Nodeidentifier.md) (**NodeIdentifier**) - A URI, CURIE or BNODE that represents a node in a model. * [Objectidentifier](types/Objectidentifier.md) (**ElementIdentifier**) - A URI or CURIE that represents an object in the model. * [RorIdentifier](types/RorIdentifier.md) ([Uriorcurie](types/Uriorcurie.md)) - Identifier from Research Organization Registry. + * [Sparqlpath](types/Sparqlpath.md) (**str**) - A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. * [String](types/String.md) (**str**) - A character string * [Time](types/Time.md) (**XSDTime**) - A time object represents a (local) time of day, independent of any particular day * [Uri](types/Uri.md) (**URI**) - a complete URI diff --git a/project/docs/types/Jsonpath.md b/project/docs/types/Jsonpath.md new file mode 100644 index 0000000..a03a58e --- /dev/null +++ b/project/docs/types/Jsonpath.md @@ -0,0 +1,12 @@ + +# Type: jsonpath + + +A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. + +URI: [linkml:Jsonpath](https://w3id.org/linkml/Jsonpath) + +| | | | +| --- | --- | --- | +| Root (builtin) type | | **str** | +| Representation | | str | diff --git a/project/docs/types/Jsonpointer.md b/project/docs/types/Jsonpointer.md new file mode 100644 index 0000000..a0e1ac4 --- /dev/null +++ b/project/docs/types/Jsonpointer.md @@ -0,0 +1,12 @@ + +# Type: jsonpointer + + +A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. + +URI: [linkml:Jsonpointer](https://w3id.org/linkml/Jsonpointer) + +| | | | +| --- | --- | --- | +| Root (builtin) type | | **str** | +| Representation | | str | diff --git a/project/docs/types/Objectidentifier.md b/project/docs/types/Objectidentifier.md index 8d80546..454ba6b 100644 --- a/project/docs/types/Objectidentifier.md +++ b/project/docs/types/Objectidentifier.md @@ -15,5 +15,5 @@ URI: [linkml:Objectidentifier](https://w3id.org/linkml/Objectidentifier) | | | | | --- | --- | --- | -| **Comments:** | | Used for inheritence and type checking | +| **Comments:** | | Used for inheritance and type checking | diff --git a/project/docs/types/Sparqlpath.md b/project/docs/types/Sparqlpath.md new file mode 100644 index 0000000..fd99a92 --- /dev/null +++ b/project/docs/types/Sparqlpath.md @@ -0,0 +1,12 @@ + +# Type: sparqlpath + + +A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. + +URI: [linkml:Sparqlpath](https://w3id.org/linkml/Sparqlpath) + +| | | | +| --- | --- | --- | +| Root (builtin) type | | **str** | +| Representation | | str | diff --git a/project/docs/use_conditions.md b/project/docs/use_conditions.md new file mode 100644 index 0000000..d6d18cf --- /dev/null +++ b/project/docs/use_conditions.md @@ -0,0 +1,22 @@ + +# Slot: use_conditions + + +Applicable conditions on use, as defined by the Data Use Ontology (DUO). + +URI: [https://w3id.org/bridge2ai/standards-schema-all/use_conditions](https://w3id.org/bridge2ai/standards-schema-all/use_conditions) + + +## Domain and Range + +[NamedThing](NamedThing.md) → 0..\* [Uriorcurie](types/Uriorcurie.md) + +## Parents + + * is_a: [node_property](node_property.md) + +## Children + + +## Used by + diff --git a/project/excel/standards_schema_all.xlsx b/project/excel/standards_schema_all.xlsx index 976484b08151a5774fbdeeb80a65cf95349b9824..42fd74ad03526d8bf04baa2559f800ce53fb949b 100644 GIT binary patch delta 1484 zcmcb-nDOdjM!o=VW)=|!1_lm>hPt&86ZzI~g6P*?x7NR(cv!9e)!x!eK}%dC^%VRR z6b(6#=z8s0yU26#krj7uU!JyBx{3SvkNBUT``Gx$Bv-$VBYe?>9ZC|ohjd!vEf48Bv=Gw?94~@5NJ|J~K zOt#AF05_lbG=p7V(htwkc~U=NR_m+Z`(CV`DQ*7f!?!O#jP&Q5+fDq&W~{naP;JpN zy;Uz4705(!hPzhI`Wx%8TS}e7itSFy^Cw$(?Y?i9vMS}N@3~iV!lU7?~ihXE7~@iq)H4 zg}SxgOl5P8#YU*Oq18J^u>Y7RM#b1OGBC(6O|Daun*70^b+eC+Csfr;TYjjCYwW9_ zVp@)s5V6V2ou5Lio8VFpRVM5n4OLd;F%`m^%{bGcY579UvGON#Zs@F==h|@SozFa{La^kVsZ^LwYAG1VF>ZCqRm6fjuY*Ouk^xiebhj){kyM zKrgy;F);8VhY_RPnm-sL0VT&o9bO%FoZn78>Wjd}dMydZZTU0x1;D?CxOA@kNt0+(jqX1oA)})DtMh Ul;$zH!9#TN-arAizn&mX0JRL--v9sr delta 1366 zcmcb*nDO#rM!o=VW)=|!1_lm>+{&)7iF|7~LG;gp)edhb9#*SAwYT*0BE?1P#0AtR zOqjv)NKEyf*xJlRM^@auJ$c&N+a`K4kNdZDR4q6@ga=)`R=N6`% zi%IT+73UtF5n_}6pEG09Oqu#cGgt0=|9Ri69a{w3&tISZJ@e<8l8GtHCzx&xb7GzH z#K}1B3BPmnVb_gz=lYg1e!Q;)_T>o%+GwbVmgkM5V6TCou5K1 zp5#&wRVL~l4OLd+F%{|rUN0*|>Y5zjWd;ewE-xv@Gn1EkDM7fWy`-3UIVL+=iB10N zB>)i<^p;{W=LU+2iW=!v<*M)jS{tlRLZxA(}v95dvVbbI4+> zB49BQA0%~~#KB@w$YSx*V6g>AVvIbKFZiec{R9<2 z@tUzRWRnX}pDKpFZzf=c*ZiO^eGSxHXa*LO^+yu(vH**v_(KdtBouUqC|dy)N>AS4 z&jWGI0e>kbQ5%qELrZK?G{raN_#L3rB3aQ*>b3>y5}mxymTj_K0MsgtZ1Frb$I z>OcqA0xgq5(abtIF;Ej?UtgdUW6I=} Lfog2OJwa*!mg>R2 diff --git a/project/jsonld/standards_schema_all.context.jsonld b/project/jsonld/standards_schema_all.context.jsonld index b5bfbb2..37b3997 100644 --- a/project/jsonld/standards_schema_all.context.jsonld +++ b/project/jsonld/standards_schema_all.context.jsonld @@ -1,7 +1,7 @@ { "comments": { "description": "Auto generated by LinkML jsonld context generator", - "generation_date": "2023-04-10T15:11:09", + "generation_date": "2024-05-13T15:51:42", "source": "standards_schema_all.yaml" }, "@context": { @@ -213,6 +213,10 @@ "@type": "@id", "@id": "B2AI_USECASE:use_cases" }, + "use_conditions": { + "@type": "@id", + "@id": "B2AI_STANDARD:use_conditions" + }, "wikidata_id": { "@type": "@id", "@id": "B2AI_ORG:wikidata_id" diff --git a/project/jsonld/standards_schema_all.jsonld b/project/jsonld/standards_schema_all.jsonld index 978c834..b3894e2 100644 --- a/project/jsonld/standards_schema_all.jsonld +++ b/project/jsonld/standards_schema_all.jsonld @@ -26,6 +26,9 @@ "name": "string", "definition_uri": "https://w3id.org/linkml/String", "description": "A character string", + "notes": [ + "In RDF serializations, a slot with range of string is treated as a literal or type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"string\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "exact_mappings": [ @@ -39,6 +42,9 @@ "name": "integer", "definition_uri": "https://w3id.org/linkml/Integer", "description": "An integer", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"integer\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "exact_mappings": [ @@ -52,6 +58,9 @@ "name": "boolean", "definition_uri": "https://w3id.org/linkml/Boolean", "description": "A binary (true or false) value", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"boolean\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "exact_mappings": [ @@ -66,6 +75,9 @@ "name": "float", "definition_uri": "https://w3id.org/linkml/Float", "description": "A real number that conforms to the xsd:float specification", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"float\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "exact_mappings": [ @@ -79,6 +91,9 @@ "name": "double", "definition_uri": "https://w3id.org/linkml/Double", "description": "A real number that conforms to the xsd:double specification", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"double\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "close_mappings": [ @@ -92,6 +107,9 @@ "name": "decimal", "definition_uri": "https://w3id.org/linkml/Decimal", "description": "A real number with arbitrary precision that conforms to the xsd:decimal specification", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"decimal\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "broad_mappings": [ @@ -106,7 +124,8 @@ "definition_uri": "https://w3id.org/linkml/Time", "description": "A time object represents a (local) time of day, independent of any particular day", "notes": [ - "URI is dateTime because OWL reasoners do not work with straight date or time" + "URI is dateTime because OWL reasoners do not work with straight date or time", + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"time\"." ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", @@ -114,7 +133,7 @@ "schema:Time" ], "base": "XSDTime", - "uri": "http://www.w3.org/2001/XMLSchema#dateTime", + "uri": "http://www.w3.org/2001/XMLSchema#time", "repr": "str", "@type": "TypeDefinition" }, @@ -123,7 +142,8 @@ "definition_uri": "https://w3id.org/linkml/Date", "description": "a date (year, month and day) in an idealized calendar", "notes": [ - "URI is dateTime because OWL reasoners don't work with straight date or time" + "URI is dateTime because OWL reasoners don't work with straight date or time", + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"date\"." ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", @@ -139,6 +159,9 @@ "name": "datetime", "definition_uri": "https://w3id.org/linkml/Datetime", "description": "The combination of a date and time", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"datetime\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "exact_mappings": [ @@ -153,6 +176,9 @@ "name": "date_or_datetime", "definition_uri": "https://w3id.org/linkml/DateOrDatetime", "description": "Either a date or a datetime", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"date_or_datetime\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "base": "str", @@ -164,6 +190,9 @@ "name": "uriorcurie", "definition_uri": "https://w3id.org/linkml/Uriorcurie", "description": "a URI or a CURIE", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"uriorcurie\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "base": "URIorCURIE", @@ -176,6 +205,9 @@ "definition_uri": "https://w3id.org/linkml/Curie", "conforms_to": "https://www.w3.org/TR/curie/", "description": "a compact URI", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"curie\"." + ], "comments": [ "in RDF serializations this MUST be expanded to a URI", "in non-RDF serializations MAY be serialized as the compact representation" @@ -192,6 +224,9 @@ "definition_uri": "https://w3id.org/linkml/Uri", "conforms_to": "https://www.ietf.org/rfc/rfc3987.txt", "description": "a complete URI", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"uri\"." + ], "comments": [ "in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node" ], @@ -209,6 +244,9 @@ "name": "ncname", "definition_uri": "https://w3id.org/linkml/Ncname", "description": "Prefix part of CURIE", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"ncname\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "base": "NCName", @@ -220,8 +258,11 @@ "name": "objectidentifier", "definition_uri": "https://w3id.org/linkml/Objectidentifier", "description": "A URI or CURIE that represents an object in the model.", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"objectidentifier\"." + ], "comments": [ - "Used for inheritence and type checking" + "Used for inheritance and type checking" ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", @@ -234,6 +275,9 @@ "name": "nodeidentifier", "definition_uri": "https://w3id.org/linkml/Nodeidentifier", "description": "A URI, CURIE or BNODE that represents a node in a model.", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"nodeidentifier\"." + ], "from_schema": "https://w3id.org/linkml/types", "imported_from": "linkml:types", "base": "NodeIdentifier", @@ -241,6 +285,51 @@ "repr": "str", "@type": "TypeDefinition" }, + { + "name": "jsonpointer", + "definition_uri": "https://w3id.org/linkml/Jsonpointer", + "conforms_to": "https://datatracker.ietf.org/doc/html/rfc6901", + "description": "A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form.", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"jsonpointer\"." + ], + "from_schema": "https://w3id.org/linkml/types", + "imported_from": "linkml:types", + "base": "str", + "uri": "http://www.w3.org/2001/XMLSchema#string", + "repr": "str", + "@type": "TypeDefinition" + }, + { + "name": "jsonpath", + "definition_uri": "https://w3id.org/linkml/Jsonpath", + "conforms_to": "https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html", + "description": "A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form.", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"jsonpath\"." + ], + "from_schema": "https://w3id.org/linkml/types", + "imported_from": "linkml:types", + "base": "str", + "uri": "http://www.w3.org/2001/XMLSchema#string", + "repr": "str", + "@type": "TypeDefinition" + }, + { + "name": "sparqlpath", + "definition_uri": "https://w3id.org/linkml/Sparqlpath", + "conforms_to": "https://www.w3.org/TR/sparql11-query/#propertypaths", + "description": "A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF.", + "notes": [ + "If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"sparqlpath\"." + ], + "from_schema": "https://w3id.org/linkml/types", + "imported_from": "linkml:types", + "base": "str", + "uri": "http://www.w3.org/2001/XMLSchema#string", + "repr": "str", + "@type": "TypeDefinition" + }, { "name": "category_type", "definition_uri": "https://w3id.org/bridge2ai/standards-schema/CategoryType", @@ -890,6 +979,22 @@ "range": "boolean", "@type": "SlotDefinition" }, + { + "name": "use_conditions", + "definition_uri": "https://w3id.org/bridge2ai/standards-datastandardortool-schema/use_conditions", + "description": "Applicable conditions on use, as defined by the Data Use Ontology (DUO).", + "from_schema": "https://w3id.org/bridge2ai/standards-datastandardortool-schema", + "is_a": "node_property", + "values_from": [ + "DUO" + ], + "domain": "NamedThing", + "slot_uri": "https://w3id.org/bridge2ai/standards-datastandardortool-schema/use_conditions", + "multivalued": true, + "owner": "use_conditions", + "range": "uriorcurie", + "@type": "SlotDefinition" + }, { "name": "requires_registration", "definition_uri": "https://w3id.org/bridge2ai/standards-datastandardortool-schema/requires_registration", @@ -1930,7 +2035,7 @@ "source_file": "standards_schema_all.yaml", "source_file_date": "2023-03-27T14:02:39", "source_file_size": 439, - "generation_date": "2023-04-10T15:11:09", + "generation_date": "2024-05-13T15:51:43", "@type": "SchemaDefinition", "@context": [ "project/jsonld/standards_schema_all.context.jsonld", diff --git a/project/owl/standards_schema_all.owl.ttl b/project/owl/standards_schema_all.owl.ttl index 45321e7..892229f 100644 --- a/project/owl/standards_schema_all.owl.ttl +++ b/project/owl/standards_schema_all.owl.ttl @@ -70,6 +70,15 @@ linkml:attributes "{}" ; linkml:is_a "DataStandardOrTool" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "use_conditions" ; + rdfs:domain ; + rdfs:range linkml:Uriorcurie ; + rdfs:subPropertyOf ; + skos:definition "Applicable conditions on use, as defined by the Data Use Ontology (DUO)." ; + linkml:is_a "node_property" . + a owl:Ontology ; rdfs:label "standards-schema-all" ; IAO:0000700 , @@ -88,7 +97,7 @@ "standards_organization_schema", "standards_schema", "standards_usecase_schema" ; - linkml:types "{'string': TypeDefinition(name='string', id_prefixes=[], definition_uri='https://w3id.org/linkml/String', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A character string', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Text'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'integer': TypeDefinition(name='integer', id_prefixes=[], definition_uri='https://w3id.org/linkml/Integer', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An integer', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Integer'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='int', uri='xsd:integer', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'boolean': TypeDefinition(name='boolean', id_prefixes=[], definition_uri='https://w3id.org/linkml/Boolean', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A binary (true or false) value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Boolean'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Bool', uri='xsd:boolean', repr='bool', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'float': TypeDefinition(name='float', id_prefixes=[], definition_uri='https://w3id.org/linkml/Float', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:float specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Float'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:float', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'double': TypeDefinition(name='double', id_prefixes=[], definition_uri='https://w3id.org/linkml/Double', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:double specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:Float'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:double', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'decimal': TypeDefinition(name='decimal', id_prefixes=[], definition_uri='https://w3id.org/linkml/Decimal', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number with arbitrary precision that conforms to the xsd:decimal specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['schema:Number'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Decimal', uri='xsd:decimal', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'time': TypeDefinition(name='time', id_prefixes=[], definition_uri='https://w3id.org/linkml/Time', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A time object represents a (local) time of day, independent of any particular day', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['URI is dateTime because OWL reasoners do not work with straight date or time'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Time'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDTime', uri='xsd:dateTime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date': TypeDefinition(name='date', id_prefixes=[], definition_uri='https://w3id.org/linkml/Date', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a date (year, month and day) in an idealized calendar', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"URI is dateTime because OWL reasoners don't work with straight date or time\"], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Date'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDate', uri='xsd:date', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'datetime': TypeDefinition(name='datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/Datetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The combination of a date and time', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:DateTime'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDateTime', uri='xsd:dateTime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date_or_datetime': TypeDefinition(name='date_or_datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/DateOrDatetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Either a date or a datetime', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='linkml:DateOrDatetime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uriorcurie': TypeDefinition(name='uriorcurie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uriorcurie', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a URI or a CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'curie': TypeDefinition(name='curie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Curie', local_names={}, conforms_to='https://www.w3.org/TR/curie/', implements=[], extensions={}, annotations={}, description='a compact URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['in RDF serializations this MUST be expanded to a URI', 'in non-RDF serializations MAY be serialized as the compact representation'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Curie', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uri': TypeDefinition(name='uri', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uri', local_names={}, conforms_to='https://www.ietf.org/rfc/rfc3987.txt', implements=[], extensions={}, annotations={}, description='a complete URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:URL'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URI', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ncname': TypeDefinition(name='ncname', id_prefixes=[], definition_uri='https://w3id.org/linkml/Ncname', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Prefix part of CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NCName', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'objectidentifier': TypeDefinition(name='objectidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Objectidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI or CURIE that represents an object in the model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['Used for inheritence and type checking'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='ElementIdentifier', uri='shex:iri', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'nodeidentifier': TypeDefinition(name='nodeidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Nodeidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI, CURIE or BNODE that represents a node in a model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NodeIdentifier', uri='shex:nonLiteral', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'category_type': TypeDefinition(name='category_type', id_prefixes=[], definition_uri='https://w3id.org/bridge2ai/standards-schema/CategoryType', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A primitive type in which the value denotes a class within the model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'edam_identifier': TypeDefinition(name='edam_identifier', id_prefixes=['edam.data', 'edam.format', 'edam.operation', 'edam.topic'], definition_uri='https://w3id.org/bridge2ai/standards-schema/EdamIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from EDAM ontology', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'mesh_identifier': TypeDefinition(name='mesh_identifier', id_prefixes=['mesh'], definition_uri='https://w3id.org/bridge2ai/standards-schema/MeshIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from Medical Subject Headings (MeSH) biomedical vocabulary.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ncit_identifier': TypeDefinition(name='ncit_identifier', id_prefixes=['NCIT'], definition_uri='https://w3id.org/bridge2ai/standards-schema/NcitIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from NCIT reference terminology with broad coverage of the cancer domain.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ror_identifier': TypeDefinition(name='ror_identifier', id_prefixes=['ror'], definition_uri='https://w3id.org/bridge2ai/standards-organization-schema/RorIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from Research Organization Registry.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-organization-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'wikidata_identifier': TypeDefinition(name='wikidata_identifier', id_prefixes=['wikidata'], definition_uri='https://w3id.org/bridge2ai/standards-organization-schema/WikidataIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from Wikidata open knowledge base.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-organization-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}" . + linkml:types "{'string': TypeDefinition(name='string', id_prefixes=[], definition_uri='https://w3id.org/linkml/String', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A character string', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['In RDF serializations, a slot with range of string is treated as a literal or type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"string\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Text'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'integer': TypeDefinition(name='integer', id_prefixes=[], definition_uri='https://w3id.org/linkml/Integer', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An integer', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"integer\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Integer'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='int', uri='xsd:integer', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'boolean': TypeDefinition(name='boolean', id_prefixes=[], definition_uri='https://w3id.org/linkml/Boolean', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A binary (true or false) value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"boolean\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Boolean'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Bool', uri='xsd:boolean', repr='bool', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'float': TypeDefinition(name='float', id_prefixes=[], definition_uri='https://w3id.org/linkml/Float', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:float specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"float\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Float'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:float', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'double': TypeDefinition(name='double', id_prefixes=[], definition_uri='https://w3id.org/linkml/Double', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:double specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"double\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:Float'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:double', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'decimal': TypeDefinition(name='decimal', id_prefixes=[], definition_uri='https://w3id.org/linkml/Decimal', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number with arbitrary precision that conforms to the xsd:decimal specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"decimal\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['schema:Number'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Decimal', uri='xsd:decimal', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'time': TypeDefinition(name='time', id_prefixes=[], definition_uri='https://w3id.org/linkml/Time', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A time object represents a (local) time of day, independent of any particular day', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['URI is dateTime because OWL reasoners do not work with straight date or time', 'If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"time\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Time'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDTime', uri='xsd:time', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date': TypeDefinition(name='date', id_prefixes=[], definition_uri='https://w3id.org/linkml/Date', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a date (year, month and day) in an idealized calendar', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"URI is dateTime because OWL reasoners don't work with straight date or time\", 'If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"date\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Date'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDate', uri='xsd:date', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'datetime': TypeDefinition(name='datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/Datetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The combination of a date and time', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"datetime\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:DateTime'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDateTime', uri='xsd:dateTime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date_or_datetime': TypeDefinition(name='date_or_datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/DateOrDatetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Either a date or a datetime', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"date_or_datetime\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='linkml:DateOrDatetime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uriorcurie': TypeDefinition(name='uriorcurie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uriorcurie', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a URI or a CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"uriorcurie\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'curie': TypeDefinition(name='curie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Curie', local_names={}, conforms_to='https://www.w3.org/TR/curie/', implements=[], extensions={}, annotations={}, description='a compact URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"curie\".'], comments=['in RDF serializations this MUST be expanded to a URI', 'in non-RDF serializations MAY be serialized as the compact representation'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Curie', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uri': TypeDefinition(name='uri', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uri', local_names={}, conforms_to='https://www.ietf.org/rfc/rfc3987.txt', implements=[], extensions={}, annotations={}, description='a complete URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"uri\".'], comments=['in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:URL'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URI', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ncname': TypeDefinition(name='ncname', id_prefixes=[], definition_uri='https://w3id.org/linkml/Ncname', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Prefix part of CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"ncname\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NCName', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'objectidentifier': TypeDefinition(name='objectidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Objectidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI or CURIE that represents an object in the model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"objectidentifier\".'], comments=['Used for inheritance and type checking'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='ElementIdentifier', uri='shex:iri', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'nodeidentifier': TypeDefinition(name='nodeidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Nodeidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI, CURIE or BNODE that represents a node in a model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"nodeidentifier\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NodeIdentifier', uri='shex:nonLiteral', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'jsonpointer': TypeDefinition(name='jsonpointer', id_prefixes=[], definition_uri='https://w3id.org/linkml/Jsonpointer', local_names={}, conforms_to='https://datatracker.ietf.org/doc/html/rfc6901', implements=[], extensions={}, annotations={}, description='A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"jsonpointer\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'jsonpath': TypeDefinition(name='jsonpath', id_prefixes=[], definition_uri='https://w3id.org/linkml/Jsonpath', local_names={}, conforms_to='https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html', implements=[], extensions={}, annotations={}, description='A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"jsonpath\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'sparqlpath': TypeDefinition(name='sparqlpath', id_prefixes=[], definition_uri='https://w3id.org/linkml/Sparqlpath', local_names={}, conforms_to='https://www.w3.org/TR/sparql11-query/#propertypaths', implements=[], extensions={}, annotations={}, description='A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['If you are authoring schemas in LinkML YAML, the type is referenced with the lower case \"sparqlpath\".'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'category_type': TypeDefinition(name='category_type', id_prefixes=[], definition_uri='https://w3id.org/bridge2ai/standards-schema/CategoryType', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A primitive type in which the value denotes a class within the model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'edam_identifier': TypeDefinition(name='edam_identifier', id_prefixes=['edam.data', 'edam.format', 'edam.operation', 'edam.topic'], definition_uri='https://w3id.org/bridge2ai/standards-schema/EdamIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from EDAM ontology', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'mesh_identifier': TypeDefinition(name='mesh_identifier', id_prefixes=['mesh'], definition_uri='https://w3id.org/bridge2ai/standards-schema/MeshIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from Medical Subject Headings (MeSH) biomedical vocabulary.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ncit_identifier': TypeDefinition(name='ncit_identifier', id_prefixes=['NCIT'], definition_uri='https://w3id.org/bridge2ai/standards-schema/NcitIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from NCIT reference terminology with broad coverage of the cancer domain.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ror_identifier': TypeDefinition(name='ror_identifier', id_prefixes=['ror'], definition_uri='https://w3id.org/bridge2ai/standards-organization-schema/RorIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from Research Organization Registry.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-organization-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'wikidata_identifier': TypeDefinition(name='wikidata_identifier', id_prefixes=['wikidata'], definition_uri='https://w3id.org/bridge2ai/standards-organization-schema/WikidataIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Identifier from Wikidata open knowledge base.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/bridge2ai/standards-organization-schema', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}" . linkml:SubsetDefinition a owl:Class ; rdfs:label "subset_definition" ; @@ -752,6 +761,9 @@ linkml:topValue a owl:DatatypeProperty ; linkml:ClassDefinition ; rdfs:label "DataSubstrate" ; rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass ; owl:onProperty ], @@ -759,19 +771,16 @@ linkml:topValue a owl:DatatypeProperty ; owl:allValuesFrom linkml:String ; owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:allValuesFrom linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass ; owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty ], + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], ; skos:definition "Represents a data substrate for Bridge2AI data. This may be a high-level data structure or a specific implementation of that structure. Interpret as \"data, in this form or format\", as compared to DataStandard, which refers to the set of rules defining a standard. For example, data in TSV format is represented as a DataSubstrate but the concept of TSV format is a DataStandard." ; linkml:attributes "{}" ; @@ -801,32 +810,26 @@ linkml:topValue a owl:DatatypeProperty ; linkml:ClassDefinition ; rdfs:label "UseCase" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom ; owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom ; owl:onProperty ], @@ -835,12 +838,18 @@ linkml:topValue a owl:DatatypeProperty ; owl:onClass linkml:Boolean ; owl:onProperty ], [ a owl:Restriction ; - owl:onClass ; - owl:onProperty ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Boolean ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:Uriorcurie ; owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], ; skos:definition "Represents a use case for Bridge2AI standards." ; linkml:attributes "{}" ; @@ -873,13 +882,6 @@ linkml:TypeDefinition a owl:Class ; linkml:ClassDefinition ; rdfs:label "DataTopic" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass ; owl:onProperty ], @@ -887,6 +889,13 @@ linkml:TypeDefinition a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass ; owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], ; skos:definition "Represents a general data topic for Bridge2AI data or the tools/standards applied to the data." ; linkml:attributes "{}" ; @@ -907,42 +916,42 @@ linkml:TypeDefinition a owl:Class ; linkml:ClassDefinition ; rdfs:label "DataStandardOrTool" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty ], + owl:onClass linkml:Uriorcurie ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom ; owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Uriorcurie ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onClass linkml:Boolean ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Uriorcurie ; owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], ; skos:definition "Represents a standard or tool in the Bridge2AI Standards Registry." ; linkml:attributes "{}" ; @@ -1004,43 +1013,43 @@ linkml:ClassDefinition a owl:Class ; linkml:ClassDefinition ; rdfs:label "NamedThing" ; rdfs:subClassOf [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Date ; owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onClass linkml:Uriorcurie ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], - [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty ; - owl:qualifiedCardinality 1 ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty ] ; + owl:onClass linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ] ; skos:definition "A generic grouping for any identifiable entity" ; skos:exactMatch ; linkml:attributes "{}" . diff --git a/project/shacl/standards_schema_all.shacl.ttl b/project/shacl/standards_schema_all.shacl.ttl index cc2b0a9..e2443ec 100644 --- a/project/shacl/standards_schema_all.shacl.ttl +++ b/project/shacl/standards_schema_all.shacl.ttl @@ -6,182 +6,182 @@ sh:closed true ; sh:description "Represents a standard in the Bridge2AI Standards Registry with particular applications or relevance to clinical or biomedical research purposes." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 17 ; - sh:path ], + sh:property [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 14 ; sh:path ], + [ sh:description "A human-readable name for a thing." ; + sh:maxCount 1 ; + sh:order 12 ; + sh:path ], [ sh:description "Text description of the standard or tool." ; sh:maxCount 1 ; sh:order 3 ; sh:path ], - [ sh:class ; - sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; - sh:nodeKind sh:IRI ; - sh:order 2 ; - sh:path ], - [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:order 8 ; - sh:path ], - [ sh:description "A unique identifier for a thing." ; + sh:order 16 ; + sh:path ], + [ sh:description "URL for basic documentation of the standard or tool." ; sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "Is the standard or tool FAIR and available free of cost?" ; + sh:order 6 ; + sh:path ], + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; sh:maxCount 1 ; - sh:order 4 ; - sh:path ], + sh:order 9 ; + sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; sh:maxCount 1 ; sh:order 7 ; sh:path ], - [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; - sh:nodeKind sh:IRI ; - sh:order 15 ; - sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; - sh:maxCount 1 ; - sh:order 18 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; + [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; - sh:order 12 ; - sh:path ], - [ sh:description "A human-readable description for a thing." ; + sh:order 19 ; + sh:path ], + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; sh:maxCount 1 ; - sh:order 13 ; - sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; + sh:order 5 ; + sh:path ], + [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], + sh:order 8 ; + sh:path ], [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; sh:order 11 ; sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 16 ; - sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "URL for basic documentation of the standard or tool." ; + [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; - sh:order 6 ; - sh:path ], - [ sh:description "The date on which the node was added." ; + sh:order 18 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 19 ; - sh:path ], + sh:order 17 ; + sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; sh:order 1 ; - sh:path ] ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 15 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 10 ; + sh:path ], + [ sh:class ; + sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; + sh:nodeKind sh:IRI ; + sh:order 2 ; + sh:path ], + [ sh:description "Is the standard or tool FAIR and available free of cost?" ; + sh:maxCount 1 ; + sh:order 4 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a general purpose standard in the Bridge2AI Standards Registry." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 16 ; - sh:path ], - [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 17 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; - sh:maxCount 1 ; - sh:order 12 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:property [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; sh:order 11 ; sh:path ], + [ sh:description "Text description of the standard or tool." ; + sh:maxCount 1 ; + sh:order 3 ; + sh:path ], [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; sh:maxCount 1 ; sh:order 7 ; sh:path ], - [ sh:description "A human-readable description for a thing." ; - sh:maxCount 1 ; - sh:order 13 ; - sh:path ], [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; sh:minCount 1 ; sh:order 10 ; sh:path ], - [ sh:description "Text description of the standard or tool." ; + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; sh:maxCount 1 ; - sh:order 3 ; - sh:path ], + sh:order 5 ; + sh:path ], + [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], + [ sh:description "The ORCiD of the person who added this node." ; + sh:maxCount 1 ; + sh:order 18 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; + sh:maxCount 1 ; + sh:order 17 ; + sh:path ], + [ sh:description "Is the standard or tool FAIR and available free of cost?" ; + sh:maxCount 1 ; + sh:order 4 ; + sh:path ], [ sh:description "URL for basic documentation of the standard or tool." ; sh:maxCount 1 ; sh:order 6 ; sh:path ], - [ sh:description "The date on which the node was added." ; + [ sh:description "A human-readable description for a thing." ; sh:maxCount 1 ; - sh:order 19 ; - sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; + sh:order 13 ; + sh:path ], + [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:class ; - sh:description "Subject standard is generally applied in the context of object data topic." ; - sh:nodeKind sh:IRI ; - sh:order 1 ; - sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:order 8 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; + sh:order 16 ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 15 ; + sh:path ], + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 18 ; - sh:path ], + sh:order 12 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 14 ; sh:path ], - [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; + [ sh:class ; + sh:description "Subject standard is generally applied in the context of object data topic." ; + sh:nodeKind sh:IRI ; + sh:order 1 ; + sh:path ], + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; sh:maxCount 1 ; - sh:order 8 ; - sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], + sh:order 9 ; + sh:path ], + [ sh:description "The date on which the node was added." ; + sh:maxCount 1 ; + sh:order 19 ; + sh:path ], [ sh:class ; sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; sh:nodeKind sh:IRI ; sh:order 2 ; - sh:path ], - [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; - sh:nodeKind sh:IRI ; - sh:order 15 ; - sh:path ], - [ sh:description "Is the standard or tool FAIR and available free of cost?" ; - sh:maxCount 1 ; - sh:order 4 ; - sh:path ] ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; @@ -199,193 +199,192 @@ sh:closed true ; sh:description "Represents a resource in the Bridge2AI Standards Registry serving to curate and store computational models. To be a respository, the resource must not index models alone." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "A human-readable description for a thing." ; - sh:maxCount 1 ; - sh:order 13 ; - sh:path ], - [ sh:class ; - sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; - sh:nodeKind sh:IRI ; - sh:order 2 ; - sh:path ], - [ sh:class ; - sh:description "Subject standard is generally applied in the context of object data topic." ; - sh:nodeKind sh:IRI ; - sh:order 1 ; - sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:property [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; sh:order 11 ; sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; - sh:maxCount 1 ; - sh:order 18 ; - sh:path ], - [ sh:description "The date on which the node was added." ; + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 19 ; - sh:path ], - [ sh:description "A unique identifier for a thing." ; + sh:order 17 ; + sh:path ], + [ sh:description "Is the standard or tool FAIR and available free of cost?" ; sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], + sh:order 4 ; + sh:path ], [ sh:class ; sh:description "A relationship that is asserted between two named things." ; sh:nodeKind sh:IRI ; sh:order 15 ; sh:path ], - [ sh:description "Text description of the standard or tool." ; - sh:maxCount 1 ; - sh:order 3 ; - sh:path ], - [ sh:description "Is the standard or tool FAIR and available free of cost?" ; - sh:maxCount 1 ; - sh:order 4 ; - sh:path ], + [ sh:class ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; + sh:nodeKind sh:IRI ; + sh:order 14 ; + sh:path ], [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; sh:order 8 ; sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; - sh:maxCount 1 ; - sh:order 12 ; - sh:path ], [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; sh:maxCount 1 ; sh:order 7 ; sh:path ], - [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 14 ; - sh:path ], - [ sh:description "The name of the person who added this node." ; + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; sh:maxCount 1 ; - sh:order 16 ; - sh:path ], + sh:order 5 ; + sh:path ], + [ sh:description "URL for basic documentation of the standard or tool." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], [ sh:description "Tags for specific sets of standards." ; sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; sh:order 0 ; sh:path ], - [ sh:description "URL for basic documentation of the standard or tool." ; + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 6 ; - sh:path ], - [ sh:description "The name of the github user who added this node." ; + sh:order 12 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:order 17 ; - sh:path ] ; + sh:order 16 ; + sh:path ], + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; + sh:maxCount 1 ; + sh:order 9 ; + sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], + [ sh:description "The date on which the node was added." ; + sh:maxCount 1 ; + sh:order 19 ; + sh:path ], + [ sh:description "The ORCiD of the person who added this node." ; + sh:maxCount 1 ; + sh:order 18 ; + sh:path ], + [ sh:class ; + sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; + sh:nodeKind sh:IRI ; + sh:order 2 ; + sh:path ], + [ sh:description "Text description of the standard or tool." ; + sh:maxCount 1 ; + sh:order 3 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 10 ; + sh:path ], + [ sh:class ; + sh:description "Subject standard is generally applied in the context of object data topic." ; + sh:nodeKind sh:IRI ; + sh:order 1 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "A set of concepts and categories, potentially defined or accompanied by their hierarchical relationships." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "URL for basic documentation of the standard or tool." ; + sh:property [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; - sh:order 6 ; - sh:path ], - [ sh:description "The name of the person who added this node." ; + sh:order 19 ; + sh:path ], + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 16 ; - sh:path ], - [ sh:description "Text description of the standard or tool." ; + sh:order 12 ; + sh:path ], + [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; sh:maxCount 1 ; - sh:order 3 ; - sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:order 7 ; + sh:path ], + [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "The name of the github user who added this node." ; + sh:order 18 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; - sh:order 17 ; - sh:path ], + sh:minCount 1 ; + sh:order 10 ; + sh:path ], + [ sh:description "URL for basic documentation of the standard or tool." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], [ sh:class ; sh:description "A relationship that is asserted between two named things." ; sh:nodeKind sh:IRI ; sh:order 15 ; sh:path ], + [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; + sh:maxCount 1 ; + sh:order 8 ; + sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 11 ; + sh:path ], + [ sh:class ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; + sh:nodeKind sh:IRI ; + sh:order 14 ; + sh:path ], [ sh:description "A human-readable description for a thing." ; sh:maxCount 1 ; sh:order 13 ; sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], [ sh:description "Is the standard or tool FAIR and available free of cost?" ; sh:maxCount 1 ; sh:order 4 ; sh:path ], - [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; + sh:order 5 ; + sh:path ], + [ sh:description "Text description of the standard or tool." ; sh:maxCount 1 ; - sh:order 8 ; - sh:path ], + sh:order 3 ; + sh:path ], [ sh:class ; sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; sh:nodeKind sh:IRI ; sh:order 2 ; sh:path ], - [ sh:description "A human-readable name for a thing." ; - sh:maxCount 1 ; - sh:order 12 ; - sh:path ], - [ sh:description "A unique identifier for a thing." ; + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], + sh:order 16 ; + sh:path ], [ sh:description "Tags for specific sets of standards." ; sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; sh:order 0 ; sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; - sh:maxCount 1 ; - sh:order 11 ; - sh:path ], - [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 14 ; - sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; sh:order 1 ; sh:path ], - [ sh:description "The date on which the node was added." ; + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 19 ; - sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; + sh:order 17 ; + sh:path ], + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; sh:maxCount 1 ; - sh:order 18 ; - sh:path ] ; + sh:order 9 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a resource in the Bridge2AI Standards Registry serving as a standardized, reusable data source." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 14 ; - sh:path ], + sh:property [ sh:description "URL for basic documentation of the standard or tool." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; sh:minCount 1 ; @@ -395,6 +394,34 @@ sh:maxCount 1 ; sh:order 11 ; sh:path ], + [ sh:description "Is the standard or tool FAIR and available free of cost?" ; + sh:maxCount 1 ; + sh:order 4 ; + sh:path ], + [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; + sh:maxCount 1 ; + sh:order 8 ; + sh:path ], + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:maxCount 1 ; + sh:order 5 ; + sh:path ], + [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], + [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; + sh:maxCount 1 ; + sh:order 9 ; + sh:path ], [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; sh:order 19 ; @@ -404,6 +431,15 @@ sh:nodeKind sh:IRI ; sh:order 2 ; sh:path ], + [ sh:class ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; + sh:nodeKind sh:IRI ; + sh:order 14 ; + sh:path ], + [ sh:description "Text description of the standard or tool." ; + sh:maxCount 1 ; + sh:order 3 ; + sh:path ], [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; sh:order 17 ; @@ -417,30 +453,6 @@ sh:nodeKind sh:IRI ; sh:order 15 ; sh:path ], - [ sh:description "A human-readable description for a thing." ; - sh:maxCount 1 ; - sh:order 13 ; - sh:path ], - [ sh:description "Is the standard or tool FAIR and available free of cost?" ; - sh:maxCount 1 ; - sh:order 4 ; - sh:path ], - [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "Text description of the standard or tool." ; - sh:maxCount 1 ; - sh:order 3 ; - sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], - [ sh:description "URL for basic documentation of the standard or tool." ; - sh:maxCount 1 ; - sh:order 6 ; - sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; @@ -450,18 +462,6 @@ sh:maxCount 1 ; sh:order 16 ; sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; - sh:maxCount 1 ; - sh:order 8 ; - sh:path ], [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 18 ; @@ -472,75 +472,66 @@ sh:closed true ; sh:description "Represents an implementation of one or more standards or tools in the Bridge2AI Standards Registry, whether as a full specification in a particular language or as an application to a specific use case." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "The date on which the node was added." ; + sh:property [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; sh:order 19 ; sh:path ], [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; - sh:order 15 ; - sh:path ], - [ sh:description "A human-readable description for a thing." ; + sh:order 14 ; + sh:path ], + [ sh:description "Is the standard or tool FAIR and available free of cost?" ; sh:maxCount 1 ; - sh:order 13 ; - sh:path ], - [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; + sh:order 4 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; - sh:order 7 ; - sh:path ], + sh:minCount 1 ; + sh:order 10 ; + sh:path ], [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; sh:order 8 ; sh:path ], + [ sh:description "URL for basic documentation of the standard or tool." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:maxCount 1 ; + sh:order 5 ; + sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 11 ; + sh:path ], [ sh:class ; sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; sh:nodeKind sh:IRI ; sh:order 2 ; sh:path ], - [ sh:description "URL for basic documentation of the standard or tool." ; + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 6 ; - sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], + sh:order 17 ; + sh:path ], + [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; sh:order 1 ; sh:path ], - [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 14 ; - sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; - sh:maxCount 1 ; - sh:order 12 ; - sh:path ], - [ sh:description "Is the standard or tool FAIR and available free of cost?" ; - sh:maxCount 1 ; - sh:order 4 ; - sh:path ], [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 18 ; sh:path ], - [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 17 ; - sh:path ], + [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], [ sh:description "Text description of the standard or tool." ; sh:maxCount 1 ; sh:order 3 ; @@ -553,36 +544,58 @@ sh:maxCount 1 ; sh:order 9 ; sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 11 ; - sh:path ] ; + sh:order 12 ; + sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 15 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a resource in the Bridge2AI Standards Registry serving to curate and/or index other resources." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:property [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], + [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; sh:maxCount 1 ; - sh:order 11 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; + sh:order 7 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; - sh:order 12 ; - sh:path ], - [ sh:description "Text description of the standard or tool." ; + sh:minCount 1 ; + sh:order 10 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:order 3 ; - sh:path ], + sh:order 16 ; + sh:path ], [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; sh:order 8 ; sh:path ], - [ sh:description "A human-readable description for a thing." ; + [ sh:description "Text description of the standard or tool." ; sh:maxCount 1 ; - sh:order 13 ; - sh:path ], + sh:order 3 ; + sh:path ], + [ sh:description "URL for basic documentation of the standard or tool." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:maxCount 1 ; + sh:order 5 ; + sh:path ], [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 18 ; @@ -596,54 +609,41 @@ sh:nodeKind sh:IRI ; sh:order 15 ; sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "URL for basic documentation of the standard or tool." ; - sh:maxCount 1 ; - sh:order 6 ; - sh:path ], + [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; sh:order 19 ; sh:path ], - [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 17 ; - sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 16 ; - sh:path ], - [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], [ sh:class ; sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; sh:nodeKind sh:IRI ; sh:order 2 ; sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; sh:order 1 ; sh:path ], - [ sh:description "A unique identifier for a thing." ; + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], + sh:order 17 ; + sh:path ], + [ sh:description "A human-readable name for a thing." ; + sh:maxCount 1 ; + sh:order 12 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 14 ; sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 11 ; + sh:path ], [ sh:description "Is the standard or tool FAIR and available free of cost?" ; sh:maxCount 1 ; sh:order 4 ; @@ -654,182 +654,182 @@ sh:closed true ; sh:description "Represents a piece of software or computational tool in the Bridge2AI Standards Registry." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "URL for basic documentation of the standard or tool." ; + sh:property [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; - sh:order 6 ; - sh:path ], + sh:order 18 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 10 ; + sh:path ], [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; sh:order 19 ; sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; sh:order 1 ; sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; - sh:maxCount 1 ; - sh:order 18 ; - sh:path ], - [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 14 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; - sh:maxCount 1 ; - sh:order 12 ; - sh:path ], - [ sh:description "A human-readable description for a thing." ; - sh:maxCount 1 ; - sh:order 13 ; - sh:path ], [ sh:description "Is the standard or tool FAIR and available free of cost?" ; sh:maxCount 1 ; sh:order 4 ; sh:path ], + [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; + sh:maxCount 1 ; + sh:order 9 ; + sh:path ], [ sh:class ; sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; sh:nodeKind sh:IRI ; sh:order 2 ; sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 16 ; - sh:path ], [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; sh:order 8 ; sh:path ], - [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; - sh:nodeKind sh:IRI ; - sh:order 15 ; - sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:description "Text description of the standard or tool." ; - sh:maxCount 1 ; - sh:order 3 ; - sh:path ], - [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; - sh:maxCount 1 ; - sh:order 11 ; - sh:path ], [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; sh:order 17 ; - sh:path ] ; - sh:targetClass . - - a sh:NodeShape ; - sh:closed true ; - sh:description "Represents a training program for skills and experience related to standards or tools in the Bridge2AI Standards Registry." ; - sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; sh:order 11 ; sh:path ], - [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 17 ; - sh:path ], [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; sh:order 16 ; sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], + [ sh:description "Text description of the standard or tool." ; + sh:maxCount 1 ; + sh:order 3 ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 15 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 14 ; sh:path ], + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:maxCount 1 ; + sh:order 5 ; + sh:path ], [ sh:description "URL for basic documentation of the standard or tool." ; sh:maxCount 1 ; sh:order 6 ; sh:path ], - [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; - sh:nodeKind sh:IRI ; - sh:order 15 ; - sh:path ], + sh:order 12 ; + sh:path ], [ sh:description "Tags for specific sets of standards." ; sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; sh:order 0 ; - sh:path ], - [ sh:description "The date on which the node was added." ; - sh:maxCount 1 ; - sh:order 19 ; - sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; + sh:path ] ; + sh:targetClass . + + a sh:NodeShape ; + sh:closed true ; + sh:description "Represents a training program for skills and experience related to standards or tools in the Bridge2AI Standards Registry." ; + sh:ignoredProperties ( rdf:type ) ; + sh:property [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 18 ; sh:path ], - [ sh:description "Is the standard or tool FAIR and available free of cost?" ; - sh:maxCount 1 ; - sh:order 4 ; - sh:path ], + [ sh:class ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; + sh:nodeKind sh:IRI ; + sh:order 14 ; + sh:path ], [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; sh:maxCount 1 ; sh:order 8 ; sh:path ], - [ sh:description "A human-readable name for a thing." ; + [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 12 ; - sh:path ], + sh:order 17 ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 15 ; + sh:path ], + [ sh:description "URL for basic documentation of the standard or tool." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], [ sh:class ; sh:description "Subject standard is generally applied in the context of object data topic." ; sh:nodeKind sh:IRI ; sh:order 1 ; sh:path ], - [ sh:description "Text description of the standard or tool." ; + [ sh:description "Is the standard or tool currently relevant to DGPs?" ; sh:maxCount 1 ; - sh:order 3 ; - sh:path ], + sh:order 9 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 10 ; + sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 11 ; + sh:path ], [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; sh:maxCount 1 ; sh:order 7 ; sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; + [ sh:description "Is the standard or tool FAIR and available free of cost?" ; + sh:maxCount 1 ; + sh:order 4 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:order 9 ; - sh:path ], + sh:order 16 ; + sh:path ], [ sh:class ; sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; sh:nodeKind sh:IRI ; sh:order 2 ; sh:path ], + [ sh:description "Text description of the standard or tool." ; + sh:maxCount 1 ; + sh:order 3 ; + sh:path ], [ sh:description "A human-readable description for a thing." ; sh:maxCount 1 ; sh:order 13 ; - sh:path ] ; + sh:path ], + [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; + sh:maxCount 1 ; + sh:order 5 ; + sh:path ], + [ sh:description "The date on which the node was added." ; + sh:maxCount 1 ; + sh:order 19 ; + sh:path ], + [ sh:description "A human-readable name for a thing." ; + sh:maxCount 1 ; + sh:order 12 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; @@ -880,20 +880,7 @@ sh:closed true ; sh:description "A subcellular location, cell type or gross anatomical part" ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 6 ; - sh:path ], - [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 0 ; - sh:path ], - [ sh:description "The date on which the node was added." ; + sh:property [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; sh:order 9 ; sh:path ], @@ -906,19 +893,32 @@ sh:nodeKind sh:IRI ; sh:order 5 ; sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 1 ; - sh:path ], + sh:order 2 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 4 ; sh:path ], - [ sh:description "A human-readable name for a thing." ; + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; - sh:order 2 ; - sh:path ], + sh:order 1 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 0 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 8 ; @@ -929,33 +929,35 @@ sh:closed true ; sh:description "Represents a data substrate for Bridge2AI data. This may be a high-level data structure or a specific implementation of that structure. Interpret as \"data, in this form or format\", as compared to DataStandard, which refers to the set of rules defining a standard. For example, data in TSV format is represented as a DataSubstrate but the concept of TSV format is a DataStandard." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "Unique NCIt Identifier" ; - sh:maxCount 1 ; - sh:order 2 ; - sh:path ], + sh:property [ sh:description "Commonly used file extensions for this substrate." ; + sh:order 4 ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 11 ; + sh:path ], [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 14 ; sh:path ], - [ sh:description "The date on which the node was added." ; - sh:maxCount 1 ; - sh:order 15 ; - sh:path ], - [ sh:description "A human-readable description for a thing." ; + [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; - sh:order 9 ; - sh:path ], + sh:minCount 1 ; + sh:order 6 ; + sh:path ], [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; sh:order 8 ; sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + [ sh:description "Unique MeSH identifier" ; sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "Potential obstacles particular to this substrate or implementation. " ; - sh:order 5 ; - sh:path ], + sh:order 1 ; + sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 9 ; + sh:path ], [ sh:description "Unique EDAM identifier" ; sh:maxCount 1 ; sh:order 0 ; @@ -963,402 +965,400 @@ [ sh:description "Data Substrate in which metadata is stored." ; sh:order 3 ; sh:path ], - [ sh:description "Commonly used file extensions for this substrate." ; - sh:order 4 ; - sh:path ], + [ sh:description "The name of the github user who added this node." ; + sh:maxCount 1 ; + sh:order 13 ; + sh:path ], [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; sh:order 12 ; sh:path ], - [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; - sh:nodeKind sh:IRI ; - sh:order 11 ; - sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], + [ sh:description "Unique NCIt Identifier" ; + sh:maxCount 1 ; + sh:order 2 ; + sh:path ], + [ sh:description "The date on which the node was added." ; + sh:maxCount 1 ; + sh:order 15 ; + sh:path ], + [ sh:description "Potential obstacles particular to this substrate or implementation. " ; + sh:order 5 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 10 ; - sh:path ], - [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 6 ; - sh:path ], - [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 13 ; - sh:path ], - [ sh:description "Unique MeSH identifier" ; - sh:maxCount 1 ; - sh:order 1 ; - sh:path ] ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a use case for Bridge2AI standards." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "Any current obstacles to implementing this use case. This could be a selection from one or more predefined categories including lack of standards, lack of relevant patient cohort, lack of funding, etc." ; - sh:maxCount 1 ; - sh:order 1 ; - sh:path ], - [ sh:class ; - sh:description "Relevance of the use case to one or more data substrates." ; + sh:property [ sh:class ; + sh:description "List of identifiers of standards and tools; those not explicitly planned to be used, by one or more Bridge2AI DGPs in addressing this use case but serving as viable alternatives, from those in the Standards Registry." ; sh:nodeKind sh:IRI ; - sh:order 4 ; - sh:path ], - [ sh:description "The date on which the node was added." ; + sh:order 6 ; + sh:path ], + [ sh:description "True is use case is likely to be implemented as part of data validation operations." ; sh:maxCount 1 ; - sh:order 21 ; - sh:path ], + sh:order 10 ; + sh:path ], [ sh:class ; - sh:description "A relationship that is asserted between two named things." ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; - sh:order 17 ; - sh:path ], - [ sh:description "True if use case is likely to be implemented as part of an experimental procedure or collection of data to be used as part of an experiment." ; - sh:maxCount 1 ; - sh:order 8 ; - sh:path ], + sh:order 16 ; + sh:path ], [ sh:class ; sh:description "List of identifiers of standards and tools; those planned to be used, or already in use, by one or more Bridge2AI DGPs in addressing this use case, from those in the Standards Registry, or TBD if standards/tools not yet finalized for this use case." ; sh:nodeKind sh:IRI ; sh:order 5 ; sh:path ], - [ sh:description "The name of the github user who added this node." ; + [ sh:class ; + sh:description "Relevance of the use case to one or more data substrates." ; + sh:nodeKind sh:IRI ; + sh:order 4 ; + sh:path ], + [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; - sh:order 19 ; - sh:path ], - [ sh:description "True if use case is likely to be implemented as part of metadata indexing, sample tracking, or any other storage of high-level data properties. Includes use cases in which metadata will be collected along with data." ; + sh:order 20 ; + sh:path ], + [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; - sh:order 9 ; - sh:path ], + sh:order 14 ; + sh:path ], [ sh:class ; sh:description "Relevance of the use case to one or more data topics." ; sh:nodeKind sh:IRI ; sh:order 3 ; sh:path ], - [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 16 ; - sh:path ], [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; sh:order 18 ; sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 15 ; + sh:path ], [ sh:description "URI of corresponding class in an ontology of experimental procedures, in CURIE form." ; sh:order 11 ; sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; - sh:maxCount 1 ; - sh:order 20 ; - sh:path ], - [ sh:description "Category of the UseCase. Not all projects will incorporate use cases in all categories." ; - sh:in ( "acquisition" "integration" "standardization" "modeling" "application" "assessment" ) ; + [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 0 ; - sh:path ], - [ sh:class ; - sh:description "List of identifiers of standards and tools; those not explicitly planned to be used, by one or more Bridge2AI DGPs in addressing this use case but serving as viable alternatives, from those in the Standards Registry." ; - sh:nodeKind sh:IRI ; - sh:order 6 ; - sh:path ], + sh:order 21 ; + sh:path ], [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; sh:minCount 1 ; sh:order 12 ; sh:path ], - [ sh:description "True is use case is likely to be implemented as part of data validation operations." ; + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; + sh:order 13 ; + sh:path ], + [ sh:description "True if use case is likely to be implemented as part of metadata indexing, sample tracking, or any other storage of high-level data properties. Includes use cases in which metadata will be collected along with data." ; sh:maxCount 1 ; - sh:order 14 ; - sh:path ], - [ sh:description "A human-readable description for a thing." ; + sh:order 9 ; + sh:path ], + [ sh:description "True if use case is likely to be implemented as part of an experimental procedure or collection of data to be used as part of an experiment." ; sh:maxCount 1 ; - sh:order 15 ; - sh:path ], - [ sh:description "Relevance of the use case to one or more DGPs." ; - sh:in ( ) ; - sh:order 2 ; - sh:path ], + sh:order 8 ; + sh:path ], [ sh:class ; sh:description "Other use case(s) this use case supports or makes possible." ; sh:nodeKind sh:IRI ; sh:order 7 ; sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 13 ; - sh:path ] ; + sh:order 19 ; + sh:path ], + [ sh:description "Category of the UseCase. Not all projects will incorporate use cases in all categories." ; + sh:in ( "acquisition" "integration" "standardization" "modeling" "application" "assessment" ) ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 0 ; + sh:path ], + [ sh:description "Relevance of the use case to one or more DGPs." ; + sh:in ( ) ; + sh:order 2 ; + sh:path ], + [ sh:description "Any current obstacles to implementing this use case. This could be a selection from one or more predefined categories including lack of standards, lack of relevant patient cohort, lack of funding, etc." ; + sh:maxCount 1 ; + sh:order 1 ; + sh:path ], + [ sh:class ; + sh:description "A relationship that is asserted between two named things." ; + sh:nodeKind sh:IRI ; + sh:order 17 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a standard or tool in the Bridge2AI Standards Registry." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "The name of the person who added this node." ; + sh:property [ sh:description "Is the standard or tool currently relevant to DGPs?" ; sh:maxCount 1 ; - sh:order 16 ; - sh:path ], - [ sh:description "Tags for specific sets of standards." ; - sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; - sh:order 0 ; - sh:path ], + sh:order 9 ; + sh:path ], [ sh:description "URL for basic documentation of the standard or tool." ; sh:maxCount 1 ; sh:order 6 ; sh:path ], - [ sh:class ; - sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; - sh:nodeKind sh:IRI ; - sh:order 2 ; - sh:path ], + [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; + sh:maxCount 1 ; + sh:order 8 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 10 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; + sh:maxCount 1 ; + sh:order 16 ; + sh:path ], [ sh:class ; sh:description "A relationship that is asserted between two named things." ; sh:nodeKind sh:IRI ; sh:order 15 ; sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; + [ sh:description "Tags for specific sets of standards." ; + sh:in ( "audiovisual" "deprecated" "fileformat" "toolkit" "clinicaldata" "multimodal" "text" "cloudplatform" "cloudservice" "codesystem" "datamodel" "dataregistry" "softwareregistry" "datavisualization" "notebookplatform" "datasheets" "machinelearningframework" "workflowlanguage" "diagnosticinstrument" "drugdata" "eyedata" "markuplanguage" "graphdataplatform" "guidelines" "minimuminformationschema" "modelcards" "obofoundry" "ontologyregistry" "policy" "proteindata" "referencegenome" "scrnaseqanalysis" "speechdata" "standardsregistry" ) ; + sh:order 0 ; + sh:path ], + [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; - sh:order 18 ; - sh:path ], + sh:order 19 ; + sh:path ], [ sh:description "A human-readable description for a thing." ; sh:maxCount 1 ; sh:order 13 ; sh:path ], - [ sh:description "Text description of the standard or tool." ; + [ sh:class ; + sh:description "Subject standard is generally applied in the context of object data topic." ; + sh:nodeKind sh:IRI ; + sh:order 1 ; + sh:path ], + [ sh:class ; + sh:description "Subject standard is managed or otherwise guided buy the object organization(s)." ; + sh:nodeKind sh:IRI ; + sh:order 2 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:order 3 ; - sh:path ], + sh:order 17 ; + sh:path ], [ sh:description "Does usage of the standard or tool require registrion of a user or group with some organization or managerial body?" ; sh:maxCount 1 ; sh:order 5 ; sh:path ], - [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], [ sh:description "Is the standard or tool FAIR and available free of cost?" ; sh:maxCount 1 ; sh:order 4 ; sh:path ], - [ sh:description "The date on which the node was added." ; - sh:maxCount 1 ; - sh:order 19 ; - sh:path ], - [ sh:description "Is the standard or tool currently relevant to DGPs?" ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + [ sh:description "Text description of the standard or tool." ; sh:maxCount 1 ; - sh:order 11 ; - sh:path ], + sh:order 3 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 14 ; sh:path ], - [ sh:description "The name of the github user who added this node." ; + [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; - sh:order 17 ; - sh:path ], + sh:order 18 ; + sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 11 ; + sh:path ], + [ sh:description "Relevant publication for the standard or tool. Prefer a DOI or PUBMED." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; sh:order 12 ; - sh:path ], - [ sh:description "Relevant code repository or other location for a formal specification of the standard or tool. Often a URL, particularly to a Git repository." ; - sh:maxCount 1 ; - sh:order 8 ; - sh:path ], - [ sh:class ; - sh:description "Subject standard is generally applied in the context of object data topic." ; - sh:nodeKind sh:IRI ; - sh:order 1 ; - sh:path ] ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a group or organization related to or responsible for one or more Bridge2AI standards." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "The name of the github user who added this node." ; + sh:property [ sh:description "The name of the person who added this node." ; + sh:maxCount 1 ; + sh:order 9 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; sh:order 10 ; sh:path ], + [ sh:description "The ORCiD of the person who added this node." ; + sh:maxCount 1 ; + sh:order 11 ; + sh:path ], + [ sh:description "A human-readable name for a thing." ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path ], [ sh:description "Unique Wikidata identifier." ; sh:maxCount 1 ; sh:order 1 ; sh:path ], - [ sh:description "The date on which the node was added." ; - sh:maxCount 1 ; - sh:order 12 ; - sh:path ], [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; sh:minCount 1 ; sh:order 4 ; sh:path ], - [ sh:description "The ORCiD of the person who added this node." ; + [ sh:description "URL for basic documentation of the standard or tool." ; sh:maxCount 1 ; - sh:order 11 ; - sh:path ], + sh:order 2 ; + sh:path ], + [ sh:description "The date on which the node was added." ; + sh:maxCount 1 ; + sh:order 12 ; + sh:path ], [ sh:class ; sh:description "A relationship that is asserted between two named things." ; sh:nodeKind sh:IRI ; sh:order 3 ; sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], + [ sh:class ; + sh:description "Holds between two classes where the domain class is a specialization of the range class." ; + sh:nodeKind sh:IRI ; + sh:order 8 ; + sh:path ], [ sh:description "A human-readable description for a thing." ; sh:maxCount 1 ; sh:order 7 ; sh:path ], - [ sh:description "URL for basic documentation of the standard or tool." ; - sh:maxCount 1 ; - sh:order 2 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:description "A human-readable name for a thing." ; - sh:maxCount 1 ; - sh:order 6 ; - sh:path ], [ sh:description "Unique ROR identifier." ; sh:maxCount 1 ; sh:order 0 ; sh:path ], - [ sh:class ; - sh:description "Holds between two classes where the domain class is a specialization of the range class." ; - sh:nodeKind sh:IRI ; - sh:order 8 ; - sh:path ] ; + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 5 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "Represents a general data topic for Bridge2AI data or the tools/standards applied to the data." ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:description "The ORCiD of the person who added this node." ; + sh:property [ sh:description "A unique identifier for a thing." ; sh:maxCount 1 ; - sh:order 12 ; - sh:path ], + sh:minCount 1 ; + sh:order 4 ; + sh:path ], + [ sh:class ; + sh:description "A relationship between a DataTopic and an anatomical entity." ; + sh:nodeKind sh:IRI ; + sh:order 3 ; + sh:path ], + [ sh:description "Unique EDAM identifier" ; + sh:maxCount 1 ; + sh:order 0 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 8 ; sh:path ], + [ sh:description "The ORCiD of the person who added this node." ; + sh:maxCount 1 ; + sh:order 12 ; + sh:path ], [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; sh:order 6 ; sh:path ], - [ sh:description "Unique NCIt Identifier" ; - sh:maxCount 1 ; - sh:order 2 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; - sh:maxCount 1 ; - sh:order 5 ; - sh:path ], - [ sh:class ; - sh:description "A relationship between a DataTopic and an anatomical entity." ; - sh:nodeKind sh:IRI ; - sh:order 3 ; - sh:path ], [ sh:description "The date on which the node was added." ; sh:maxCount 1 ; sh:order 13 ; sh:path ], + [ sh:description "A human-readable description for a thing." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], + [ sh:description "The name of the person who added this node." ; + sh:maxCount 1 ; + sh:order 10 ; + sh:path ], [ sh:class ; sh:description "A relationship that is asserted between two named things." ; sh:nodeKind sh:IRI ; sh:order 9 ; sh:path ], - [ sh:description "A unique identifier for a thing." ; + [ sh:description "The name of the github user who added this node." ; sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 4 ; - sh:path ], - [ sh:description "Unique EDAM identifier" ; + sh:order 11 ; + sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; sh:maxCount 1 ; - sh:order 0 ; - sh:path ], + sh:order 5 ; + sh:path ], [ sh:description "Unique MeSH identifier" ; sh:maxCount 1 ; sh:order 1 ; sh:path ], - [ sh:description "A human-readable description for a thing." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 10 ; - sh:path ], - [ sh:description "The name of the github user who added this node." ; + [ sh:description "Unique NCIt Identifier" ; sh:maxCount 1 ; - sh:order 11 ; - sh:path ] ; + sh:order 2 ; + sh:path ] ; sh:targetClass . a sh:NodeShape ; sh:closed true ; sh:description "A generic grouping for any identifiable entity" ; sh:ignoredProperties ( rdf:type ) ; - sh:property [ sh:class ; + sh:property [ sh:description "The date on which the node was added." ; + sh:maxCount 1 ; + sh:order 9 ; + sh:path ], + [ sh:description "A unique identifier for a thing." ; + sh:maxCount 1 ; + sh:minCount 1 ; + sh:order 0 ; + sh:path ], + [ sh:class ; sh:description "A relationship that is asserted between two named things." ; sh:nodeKind sh:IRI ; sh:order 5 ; sh:path ], - [ sh:description "The name of the person who added this node." ; - sh:maxCount 1 ; - sh:order 6 ; - sh:path ], [ sh:description "A human-readable description for a thing." ; sh:maxCount 1 ; sh:order 3 ; sh:path ], + [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + sh:maxCount 1 ; + sh:order 1 ; + sh:path ], + [ sh:description "The name of the github user who added this node." ; + sh:maxCount 1 ; + sh:order 7 ; + sh:path ], [ sh:class ; sh:description "Holds between two classes where the domain class is a specialization of the range class." ; sh:nodeKind sh:IRI ; sh:order 4 ; sh:path ], - [ sh:description "A unique identifier for a thing." ; - sh:maxCount 1 ; - sh:minCount 1 ; - sh:order 0 ; - sh:path ], [ sh:description "A human-readable name for a thing." ; sh:maxCount 1 ; sh:order 2 ; sh:path ], - [ sh:description "The name of the github user who added this node." ; - sh:maxCount 1 ; - sh:order 7 ; - sh:path ], - [ sh:description "The date on which the node was added." ; - sh:maxCount 1 ; - sh:order 9 ; - sh:path ], - [ sh:description "Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the entity type class, e.g., \"BiomedicalStandard\"." ; + [ sh:description "The name of the person who added this node." ; sh:maxCount 1 ; - sh:order 1 ; - sh:path ], + sh:order 6 ; + sh:path ], [ sh:description "The ORCiD of the person who added this node." ; sh:maxCount 1 ; sh:order 8 ; diff --git a/project/shex/standards_schema_all.shex b/project/shex/standards_schema_all.shex index 56ca7ed..f0afede 100644 --- a/project/shex/standards_schema_all.shex +++ b/project/shex/standards_schema_all.shex @@ -23,7 +23,7 @@ linkml:Double xsd:double linkml:Decimal xsd:decimal -linkml:Time xsd:dateTime +linkml:Time xsd:time linkml:Date xsd:date @@ -43,6 +43,12 @@ linkml:Objectidentifier IRI linkml:Nodeidentifier NONLITERAL +linkml:Jsonpointer xsd:string + +linkml:Jsonpath xsd:string + +linkml:Sparqlpath xsd:string + B2AI:CategoryType IRI B2AI:EdamIdentifier IRI diff --git a/src/standards_schemas/datamodel/standards_schema_all.py b/src/standards_schemas/datamodel/standards_schema_all.py index 9782318..7ae65c0 100644 --- a/src/standards_schemas/datamodel/standards_schema_all.py +++ b/src/standards_schemas/datamodel/standards_schema_all.py @@ -1,5 +1,5 @@ # Auto generated from standards_schema_all.yaml by pythongen.py version: 0.9.0 -# Generation date: 2023-04-10T15:11:21 +# Generation date: 2024-05-13T15:51:55 # Schema: standards-schema-all # # id: https://w3id.org/bridge2ai/standards-schema-all @@ -1025,6 +1025,9 @@ class slots: slots.is_open = Slot(uri=B2AI_STANDARD.is_open, name="is_open", curie=B2AI_STANDARD.curie('is_open'), model_uri=DEFAULT_.is_open, domain=NamedThing, range=Optional[Union[bool, Bool]]) +slots.use_conditions = Slot(uri=B2AI_STANDARD.use_conditions, name="use_conditions", curie=B2AI_STANDARD.curie('use_conditions'), + model_uri=DEFAULT_.use_conditions, domain=NamedThing, range=Optional[Union[Union[str, URIorCURIE], List[Union[str, URIorCURIE]]]]) + slots.requires_registration = Slot(uri=B2AI_STANDARD.requires_registration, name="requires_registration", curie=B2AI_STANDARD.curie('requires_registration'), model_uri=DEFAULT_.requires_registration, domain=NamedThing, range=Optional[Union[bool, Bool]])