From a7faf1cb30b129601153383f3850c6f96a7948cb Mon Sep 17 00:00:00 2001 From: Brent Pedersen Date: Fri, 18 Mar 2022 11:28:39 +0100 Subject: [PATCH] drop travis --- .travis.yml | 20 -------------------- README.md | 4 +--- 2 files changed, 1 insertion(+), 23 deletions(-) delete mode 100644 .travis.yml diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index be24c2c..0000000 --- a/.travis.yml +++ /dev/null @@ -1,20 +0,0 @@ -language: c -env: - - BRANCH=devel - -before_install: - - export LD_LIBRARY_PATH=./htslib-1.10.2/:/usr/local/lib - - export PATH="$TRAVIS_BUILD_DIR/nim-$BRANCH/bin:$PATH" - - export NIM_LIB_PREFIX=$TRAVIS_BUILD_DIR/nim-$BRANCH/ - -install: - - bash ./scripts/install.sh -script: - - nimble test - - bash functional-tests.sh - - nim c -r depthstat.nim - - nim c -d:release --cc:$CC mosdepth.nim - - ./mosdepth -h -branches: - except: - - gh-pages diff --git a/README.md b/README.md index 4ffb141..cb9bec9 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,6 @@ fast BAM/CRAM depth calculation for **WGS**, **exome**, or **targeted sequencing ![logo](https://user-images.githubusercontent.com/1739/29678184-da1f384c-88ba-11e7-9d98-df4fe3a59924.png "logo") [![Build](https://github.com/brentp/mosdepth/workflows/Build/badge.svg?branch=master)](https://github.com/brentp/mosdepth/actions?query=workflow%3ABuild) -[![Build Status](https://travis-ci.com/brentp/mosdepth.svg?branch=master)](https://travis-ci.com/brentp/mosdepth) [![citation](https://img.shields.io/badge/cite-open%20access-orange.svg)](https://academic.oup.com/bioinformatics/article/doi/10.1093/bioinformatics/btx699/4583630?guestAccessKey=35b55064-4566-4ab3-a769-32916fa1c6e6) @@ -171,8 +170,7 @@ contains `libhts.so`. e.g. If you get the error `could not import: hts_check_EOF` you may need to install a more recent version of htslib. -If you do want to install from source, see the [travis.yml](https://github.com/brentp/mosdepth/blob/master/.travis.yml) -and the [install.sh](https://github.com/brentp/mosdepth/blob/master/scripts/install.sh). +If you do want to install from source, see the [install.sh](https://github.com/brentp/mosdepth/blob/master/scripts/install.sh). If you use archlinux, you can [install as a package](https://aur.archlinux.org/packages/mosdepth/)