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T2 doesn't align too well? #4

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soichih opened this issue Nov 26, 2019 · 1 comment
Open

T2 doesn't align too well? #4

soichih opened this issue Nov 26, 2019 · 1 comment

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@soichih
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soichih commented Nov 26, 2019

I've aligned t1 and t2 from CSI1 BOLD5000.

The t1 seems to align well, but not t2.

image

It's using t2 version of the template, so I am not sure what's going wrong.

+ flirt -interp spline -in input_robustfov.nii.gz -ref templates/MNI152_T2_1mm -omat roi2std.mat -out acpc_mni.nii.gz
@bacaron
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bacaron commented Oct 17, 2020

I'm so sorry to get to this so late @soichih. Is this still an issue? The image you provided looks fine to me.

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@soichih @bacaron