diff --git a/README.md b/README.md index 644c5bb..4cf9ca0 100644 --- a/README.md +++ b/README.md @@ -48,7 +48,18 @@ skani dist refs/e.coli-EC590.fasta refs/e.coli-K12.fasta #./target/release/skani dist refs/e.coli-EC590.fasta refs/e.coli-K12.fasta ``` -#### Option 2: Pre-built x86-64 linux statically compiled executable +See the [Releases](https://github.com/bluenote-1577/skani/releases) page for obtaining specific versions of skani. + +#### Option 2: Conda (source version: 0.2.0) +[![Anaconda-Server Badge](https://anaconda.org/bioconda/skani/badges/version.svg)](https://anaconda.org/bioconda/skani) +[![Anaconda-Server Badge](https://anaconda.org/bioconda/skani/badges/latest_release_date.svg)](https://anaconda.org/bioconda/skani) +```sh +conda install -c bioconda skani +``` + +Note (2023-9-26): There's currently a bug on the conda version where skani appears to be version 0.1.4 instead of 0.2.0. This is fixed in the github repo and will be fixed in the next release. + +#### Option 3: Pre-built x86-64 linux statically compiled executable We offer a pre-built statically compiled executable for x86-64 linux systems. That is, if you're on a x86-64 linux system, you can just download the binary and run it without installing anything. @@ -60,19 +71,7 @@ chmod +x skani ./skani -h ``` -Note: the binary is compiled with a different set of libraries (musl instead of glibc). This appears to make it slightly slower on a simple test (~3% or so), but it is maybe not a huge deal for many applications. - -See the [Releases](https://github.com/bluenote-1577/skani/releases) page for obtaining specific versions of skani. - - -#### Option 3: Conda (source version: 0.2.0) -[![Anaconda-Server Badge](https://anaconda.org/bioconda/skani/badges/version.svg)](https://anaconda.org/bioconda/skani) -[![Anaconda-Server Badge](https://anaconda.org/bioconda/skani/badges/latest_release_date.svg)](https://anaconda.org/bioconda/skani) -```sh -conda install -c bioconda skani -``` - -Note (2023-9-26): There's currently a bug on the conda version where skani appears to be version 0.1.4 instead of 0.2.0. This is fixed in the github repo and will be fixed in the next release. +**Important**: the binary runs slightly slower (3-10%) most of the time, but it can be drastically slower on some tasks. ## Quick start