how to keep metanetx_universal_model_bigg_rhea_kegg_brenda database updated with metanetx database

[chang88ye]

Some metanetx reaction or metabolite identifiers keep being depreciated. How do I update metanetx_universal_model_bigg_rhea_kegg_brenda accordingly ?

[phantomas1234]

Thanks for letting us know, we'll upgrade the universal models in an upcoming release (reopening this issue so that we don't forget). Of course, contributions in the form of pull requests are always welcome (the script that creates the universal models can be found here https://github.com/biosustain/cameo/blob/devel/scripts/parse_metanetx.py).

[sruti-dammalapati]

Wondering if someone has worked on this? If not, I've made some updates to the parser to build the latest models from metanetx. There were many identifiers that deprecated over the last five years. I will be happy to submit a pull request!

[phantomas1234]

@sruti-dammalapati thanks, that would be great!