Cannot sign into model upload website

[mattaq31]

Hi,

I'm attempting to upload a new model to BioImage.IO. However, I am unable to take any action as the website (https://bioimageio-uploader.netlify.app/#/uploader/add is not allowing me to sign-in (screen recording attached).

On further investigation it appears that the login button is at fault as it is not returning a useful URL for signing in. Would you be able to investigate this issue or advice on alternative methods for uploading a model?

Thanks in advance.

Screen.Recording.2025-01-03.at.12.51.22.PM.mov

[FynnBe]

I can still reproduce this issue.

[FynnBe]

bioimage.io login is back online

[mattaq31]

I am still unable to login or upload models - the button still seems unclickable. Does the update take some time for it to roll out to the website?

Thanks!

[FynnBe]

can confirm it's down again. help please @oeway

[FynnBe]

It does work again now...

[mattaq31]

@FynnBe it's still not working on my end! Checked on both Mac and Windows.

[FynnBe]

@oeway please advise

[oeway]

Hi, sorry, it seems there are some regression issue due to recent upgrade in hypha, now it should be back, please check and let me know if it works.

[FynnBe]

works again, please reopen if the login issue reappears

[mattaq31]

Still not working... is there some other way for me to upload models to bioimage.io?

[oeway]

@mattaq31 I am on it now, I can reproduce the issue.

[oeway]

The issue is that the current server crash after running for a while, and I cannot find the exact issue yet.

Rolled back to a previous hypha version, please check if this version works.

Sorry about this.

@mattaq31

[mattaq31]

Unfortunately still doesn't seem to be working...

[oeway]

I had to go back to a much earlier version it seems, now seems to be working for a while without crashing.

Thanks a lot for your patience.

[FynnBe]

I implemented upload via issue request: https://github.com/bioimage-io/collection/issues/new?template=-bioimageiobot--please-upload.md

See bioimage-io/collection#123 and bioimage-io/collection#124 for examples/

The title should include the concept id (e.g. polite-pig; it is not yet generated for you if missing).
Maybe this can be an interim backup solution...

[mattaq31]

@oeway unfortunately login still doesn't work... I'm happy to use the issue request uploader instead though, which I'll do later today (thanks @FynnBe)

[mattaq31]

@FynnBe just to confirm can I just choose any adjective-noun format for my models? Is there some way for me to know which ones are already taken?

[FynnBe]

@FynnBe just to confirm can I just choose any adjective-noun format for my models?

no, we restrict the choices to fixed lists defined in our collection config: https://github.com/bioimage-io/collection/blob/73cf68a9c0f01df1d0f25089161ea6d6ddd768b5/bioimageio_collection_config.json#L542

Is there some way for me to know which ones are already taken?

For convenience I setup generation of a file with all available (untaken) description IDs: https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/available_ids.json

Make sure to select an ID from for the appropriate description type ('model', 'dataset' or 'notebook')

I just added confirmation to our Terms of Service in the issue template and do not have time right now to finish this update, so I'm afraid this upload option is not yet available. I try finish this asap!!

As a goodie I also add in that the upload does not need an id, in which case it will be chosen randomly.

More details will follow soon. Thank you for your tremendous patience!

[mattaq31]

Ok that's no problem - please do let me know when the update is complete. I'll probably place the upload onto a temporary download link for the GitHub issue (if a direct upload is available that would also be very useful).

[FynnBe]

I think upload via issue is ready (and if not I'll upload any resource posted in such an issue manually ;-) )
See bioimage-io/collection#135 for an example.

[mattaq31]

Thanks @FynnBe - I've added two models: bioimage-io/collection#136 and bioimage-io/collection#137 - seems like one has errored out? Not sure what the error message means though..

[FynnBe]

seems like one has errored out? Not sure what the error message means though..

answered in the respective new issues...

bioimage.io login remains offline. I'm getting

Uncaught (in promise) Timeout Error: Failed to get remote service: */manager-statuesque-gerbil-08887958:default

[oeway]

It looks the issue is coming from somewhere else in the cluster, I am disable the redis server (which we used internally for communication within the cluster) see if it makes the service more stable. I will keep an eye on this. Sorry about this.

[FynnBe]

this seems to have fixed it. Please reopen if the issue reoccurs

[FynnBe]

hmm. even though it works (I seem to be logged in) I did get this pop up now..