diff --git a/sequence_processing_pipeline/templates/nuqc_job.sh b/sequence_processing_pipeline/templates/nuqc_job.sh index d49824a8..3946fe19 100644 --- a/sequence_processing_pipeline/templates/nuqc_job.sh +++ b/sequence_processing_pipeline/templates/nuqc_job.sh @@ -138,7 +138,7 @@ function mux-runner () { fastq_pair -t 50000000 ${jobd}/reads.r1.fastq ${jobd}/reads.r2.fastq # keep seqs.movi.txt and migrate it to NuQCJob directory. - mv ${jobd}/seqs.movi.txt {{output_path}}/seqs.movi.${SLURM_ARRAY_TASK_ID}.txt + mv ${jobd}/seqs.movi.txt.gz {{output_path}}/seqs.movi.${SLURM_ARRAY_TASK_ID}.txt.gz } export -f mux-runner