From 9de939c0bb240966448ee96c80cef178cd2f99af Mon Sep 17 00:00:00 2001 From: Charles Cowart <42684307+charles-cowart@users.noreply.github.com> Date: Thu, 13 Jun 2024 13:28:36 -0700 Subject: [PATCH] Update sequence_processing_pipeline/templates/nuqc_job.sh Co-authored-by: Daniel McDonald --- sequence_processing_pipeline/templates/nuqc_job.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sequence_processing_pipeline/templates/nuqc_job.sh b/sequence_processing_pipeline/templates/nuqc_job.sh index 758520de..623015f2 100644 --- a/sequence_processing_pipeline/templates/nuqc_job.sh +++ b/sequence_processing_pipeline/templates/nuqc_job.sh @@ -74,7 +74,7 @@ function mux-runner () { jobd=${TMPDIR} id_map=${jobd}/id_map - seqs_r1=${jobd}/seqs.r1.fastq + seqs_r1=${jobd}/seqs.r1.fastq.gz seqs_r2=${jobd}/seqs.r2.fastq r1_filt=${jobd}/seqs.r1.adapter-removed.fastq.gz