From 9bc835a40f8406aa80551ab1bcb72798b08fdb36 Mon Sep 17 00:00:00 2001 From: Charles Cowart <42684307+charles-cowart@users.noreply.github.com> Date: Thu, 13 Jun 2024 13:28:11 -0700 Subject: [PATCH] Update sequence_processing_pipeline/templates/nuqc_job.sh Co-authored-by: Daniel McDonald --- sequence_processing_pipeline/templates/nuqc_job.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sequence_processing_pipeline/templates/nuqc_job.sh b/sequence_processing_pipeline/templates/nuqc_job.sh index ee9f01c1..758520de 100644 --- a/sequence_processing_pipeline/templates/nuqc_job.sh +++ b/sequence_processing_pipeline/templates/nuqc_job.sh @@ -76,7 +76,7 @@ function mux-runner () { id_map=${jobd}/id_map seqs_r1=${jobd}/seqs.r1.fastq seqs_r2=${jobd}/seqs.r2.fastq - r1_filt=${jobd}/seqs.r1.adapter-removed.fastq + r1_filt=${jobd}/seqs.r1.adapter-removed.fastq.gz for i in $(seq 1 ${n}) do