diff --git a/tests/data/bids_specs_with_oligarchy.json b/tests/data/bids_specs_with_oligarchy.json deleted file mode 100644 index e2cb8a6..0000000 --- a/tests/data/bids_specs_with_oligarchy.json +++ /dev/null @@ -1,104 +0,0 @@ -{ - "name": "bids", - "entities": [ - { - "name": "subject", - "pattern": "[/\\\\]+sub-([a-zA-Z0-9]+)", - "directory": "{subject}" - }, - { - "name": "oligarchy", - "pattern": "[_/\\\\]+ses-([a-zA-Z0-9]+)", - "mandatory": false, - "directory": "{subject}{oligarchy}" - }, - { - "name": "task", - "pattern": "[_/\\\\]+task-([a-zA-Z0-9]+)" - }, - { - "name": "acquisition", - "pattern": "[_/\\\\]+acq-([a-zA-Z0-9]+)" - }, - { - "name": "ceagent", - "pattern": "[_/\\\\]+ce-([a-zA-Z0-9]+)" - }, - { - "name": "reconstruction", - "pattern": "[_/\\\\]+rec-([a-zA-Z0-9]+)" - }, - { - "name": "direction", - "pattern": "[_/\\\\]+dir-([a-zA-Z0-9]+)" - }, - { - "name": "run", - "pattern": "[_/\\\\]+run-0*(\\d+)", - "dtype": "int" - }, - { - "name": "proc", - "pattern": "[_/\\\\]+proc-([a-zA-Z0-9]+)" - }, - { - "name": "modality", - "pattern": "[_/\\\\]+mod-([a-zA-Z0-9]+)" - }, - { - "name": "echo", - "pattern": "[_/\\\\]+echo-([0-9]+)" - }, - { - "name": "recording", - "pattern": "[_/\\\\]+recording-([a-zA-Z0-9]+)" - }, - { - "name": "space", - "pattern": "[_/\\\\]+space-([a-zA-Z0-9]+)" - }, - { - "name": "suffix", - "pattern": "[._]*([a-zA-Z0-9]*?)\\.[^/\\\\]+$" - }, - { - "name": "scans", - "pattern": "(.*\\_scans.tsv)$" - }, - { - "name": "fmap", - "pattern": "(phasediff|magnitude[1-2]|phase[1-2]|fieldmap|epi)\\.nii" - }, - { - "name": "datatype", - "pattern": "[/\\\\]+(func|anat|fmap|dwi|meg|eeg)[/\\\\]+" - }, - { - "name": "extension", - "pattern": "[._]*[a-zA-Z0-9]*?(\\.[^/\\\\]+)$" - } - ], - - "default_path_patterns": [ - "sub-{subject}[/ses-{oligarchy}]/{datatype|anat}/sub-{subject}[_ses-{oligarchy}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|anat}/sub-{subject}[_ses-{oligarchy}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_mod-{modality}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|func}/sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|dwi}/sub-{subject}[_ses-{oligarchy}][_acq-{acquisition}]_{suffix}{extension<.bval|.bvec|.json|.nii.gz|.nii>|.nii.gz}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|fmap}/sub-{subject}[_ses-{oligarchy}][_acq-{acquisition}][_dir-{direction}][_run-{run}]_{fmap}{extension<.nii|.nii.gz|.json>|.nii.gz}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|fmap}/sub-{subject}[_ses-{oligarchy}][_acq-{acquisition}][_ce-{ceagent}]_dir-{direction}[_run-{run}]_{fmap}{extension<.nii|.nii.gz|.json>|.nii.gz}", - "sub-{subject}[/ses-{oligarchy}]/[{datatype|func}/]sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_recording-{recording}]_{suffix}{extension<.tsv|.json>|.tsv}", - "sub-{subject}[/ses-{oligarchy}]/[{datatype|func}/]sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_recording-{recording}]_{suffix}{extension<.tsv.gz|.json>|.tsv.gz}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|meg}/sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}][_run-{run}][_proc-{proc}]_{suffix}{extension}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|meg}/sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}][_run-{run}][_proc-{proc}]_{suffix}{extension<.tsv|.json>|.tsv}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|meg}/sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}]_{suffix}{extension<.json>|.json}", - "sub-{subject}[/ses-{oligarchy}]/{datatype|meg}/sub-{subject}[_ses-{oligarchy}]_task-{task}[_acq-{acquisition}]_{suffix}{extension<.jpg>|.jpg}", - "[acq-{acquisition}_][ce-{ceagent}_][rec-{reconstruction}_]{suffix}{extension<.json>|.json}", - "[acq-{acquisition}_][ce-{ceagent}_][rec-{reconstruction}_][mod-{modality}_]{suffix}{extension<.json>|.json}", - "task-{task}[_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}]_{suffix}{extension<.json>|.json}", - "[acq-{acquisition}_]{suffix}{extension<.json>|.json}", - "[acq-{acquisition}_][dir-{direction}_][run-{run}_]{fmap}{extension<.json>|.json}", - "[acq-{acquisition}_][ce-{ceagent}_]dir-{direction}[_run-{run}]_{fmap}{extension<.json>|.json}", - "task-{task}[_acq-{acquisition}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_recording-{recording}]_{suffix}{extension<.json>|.json}", - "task-{task}[_acq-{acquisition}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_recording-{recording}]_{suffix}{extension<.json>}" - ] -}