diff --git a/_data/tools.yml b/_data/tools.yml index 19be03c9..41817f96 100644 --- a/_data/tools.yml +++ b/_data/tools.yml @@ -61,6 +61,32 @@ - R description: Working with Brain Imaging Data Structure in R +- name: bids stats model + url: https://pypi.org/project/bsmschema/ + documentation: https://bids-standard.github.io/stats-models/index.html + language: + - python + distribution: + - name: pypi + url: https://pypi.org/project/bsmschema/ + description: Validate BIDS statistical model. To learn more the [BIDS stats model website](https://bids-standard.github.io/stats-models/index.html) + +- name: Hierarchical Event Descriptors (HED) online tools + url: https://hedtools.org/hed + documentation: https://www.hed-resources.org + language: + - wesbite + description: Online tools for annotation, validation, summary, and assembly of event file contents and annotations. + +- name: Hierarchical Event Descriptors (HED) python tools + url: https://github.com/hed-standard/hed-python + documentation: https://www.hed-resources.org + language: python + distribution: + - name: pypi + url: https://pypi.org/project/hedtools/ + description: HED libraries supporting schema development as well as annotation, validation, and analysis. + - name: Brainstorm url: http://neuroimage.usc.edu/brainstorm/ language: @@ -84,6 +110,12 @@ - name: pypi url: https://pypi.org/project/cubids/ +- name: File mapper + url: https://github.com/DCAN-Labs/file-mapper + language: + - python + description: An easy tool to copy/move/symlink files from one directory to the other! Can be used to "convert" dataset to be BIDS compliant. + - name: GUI dataset description generator url: https://github.com/tolik-g/BIDS documentation: @@ -104,6 +136,27 @@ - Python description: collection of tools for converting magnetoencephalography (MEG) data into BIDS format, as well as some helper functions for creating the folders and metadata needed for a BIDS dataset. +- name: neurobagel annotate + url: https://annotate.neurobagel.org/ + documentation: https://neurobagel.org/data_prep/ + language: + - website + description: This tool allows you to create a machine readable data dictionary in .json format for a tabular phenotypic file in .tsv format ("Data table"). + +- name: neurobagel query + url: https://query.neurobagel.org/ + documentation: https://neurobagel.org/query_tool/ + language: + - website + description: Neurobagel's query tool is a web interface for searching across a BIDS datasets based on various subject clinical-demographic and imaging parameters. + +- name: nipopy + url: https://github.com/neurodatascience/nipoppy + documentation: https://neurobagel.org/nipoppy/overview/ + language: + - Python + description: Lightweight neuroimaging workflow manager to help with DICOM to BIDS conversion and running BIDS apps. + - name: OpenNeuro url: http://openneuro.org description: A free and open platform for validating and sharing BIDS-compliant data.