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very low cross validated R2 #3

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Yves33 opened this issue Jan 13, 2025 · 0 comments
Open

very low cross validated R2 #3

Yves33 opened this issue Jan 13, 2025 · 0 comments

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@Yves33
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Yves33 commented Jan 13, 2025

Hi (again),

After playing with my data (both glmnet and scikit-learn version), I find that my cross validated R2 are extremely low (<0.05) and even sometimes negative. How should I interpret this:
1 - there is definitively no relationship between my transcriptomes and my ephy properties
2 - the model fails to find this relationship
3 - there are some issues in my code / matrices

Thanks in advance
(see example more or less copied from demo.ipynb)

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