Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

--maxThreads? #29

Open
conchoecia opened this issue Mar 17, 2017 · 1 comment
Open

--maxThreads? #29

conchoecia opened this issue Mar 17, 2017 · 1 comment
Assignees
@mitenjain

Comments

@conchoecia
Copy link

Hello,

I am running marginAlign and used --maxThreads 90, however the process lastal is only using one thread. Is this normal?

What parts of marginAlign are parallelized, and is the = necessary between --maxThreads and the argument?

Thanks!
@mitenjain mitenjain self-assigned this Mar 18, 2017
@mitenjain
Copy link
Collaborator

Hello,

I am working on a fix to parallelize BWA and LAST within the framework. This fix should be pushed shortly.

Sorry for the hassle.
-Miten

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@mitenjain mitenjain

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@mitenjain @conchoecia