diff --git a/align/align.go b/search/align/align.go
similarity index 99%
rename from align/align.go
rename to search/align/align.go
index 0eaddae7..ff94f995 100644
--- a/align/align.go
+++ b/search/align/align.go
@@ -66,7 +66,7 @@ Tim
 package align
 
 import (
-	"github.com/bebop/poly/align/matrix"
+	"github.com/bebop/poly/search/align/matrix"
 )
 
 // Scoring is a struct that holds the scoring matrix for match, mismatch, and gap penalties.
diff --git a/align/align_test.go b/search/align/align_test.go
similarity index 98%
rename from align/align_test.go
rename to search/align/align_test.go
index 547d1c08..b96ed9b2 100644
--- a/align/align_test.go
+++ b/search/align/align_test.go
@@ -3,9 +3,9 @@ package align_test
 import (
 	"testing"
 
-	"github.com/bebop/poly/align"
-	"github.com/bebop/poly/align/matrix"
 	"github.com/bebop/poly/alphabet"
+	"github.com/bebop/poly/search/align"
+	"github.com/bebop/poly/search/align/matrix"
 )
 
 func TestNeedlemanWunsch(t *testing.T) {
diff --git a/align/example_test.go b/search/align/example_test.go
similarity index 96%
rename from align/example_test.go
rename to search/align/example_test.go
index 3d455a10..82ce02a5 100644
--- a/align/example_test.go
+++ b/search/align/example_test.go
@@ -4,9 +4,9 @@ package align_test
 import (
 	"fmt"
 
-	"github.com/bebop/poly/align"
-	"github.com/bebop/poly/align/matrix"
 	"github.com/bebop/poly/alphabet"
+	"github.com/bebop/poly/search/align"
+	"github.com/bebop/poly/search/align/matrix"
 )
 
 func ExampleNeedlemanWunsch() {
diff --git a/align/matrix/matrices.go b/search/align/matrix/matrices.go
similarity index 100%
rename from align/matrix/matrices.go
rename to search/align/matrix/matrices.go
diff --git a/align/matrix/matrix.go b/search/align/matrix/matrix.go
similarity index 100%
rename from align/matrix/matrix.go
rename to search/align/matrix/matrix.go
diff --git a/align/matrix/matrix_test.go b/search/align/matrix/matrix_test.go
similarity index 96%
rename from align/matrix/matrix_test.go
rename to search/align/matrix/matrix_test.go
index d1e5d002..88eba158 100644
--- a/align/matrix/matrix_test.go
+++ b/search/align/matrix/matrix_test.go
@@ -3,8 +3,8 @@ package matrix_test
 import (
 	"testing"
 
-	"github.com/bebop/poly/align/matrix"
 	"github.com/bebop/poly/alphabet"
+	"github.com/bebop/poly/search/align/matrix"
 	"github.com/stretchr/testify/assert"
 )
 
diff --git a/bwt/bitvector.go b/search/bwt/bitvector.go
similarity index 100%
rename from bwt/bitvector.go
rename to search/bwt/bitvector.go
diff --git a/bwt/bitvector_test.go b/search/bwt/bitvector_test.go
similarity index 100%
rename from bwt/bitvector_test.go
rename to search/bwt/bitvector_test.go
diff --git a/bwt/bwt.go b/search/bwt/bwt.go
similarity index 100%
rename from bwt/bwt.go
rename to search/bwt/bwt.go
diff --git a/bwt/bwt_test.go b/search/bwt/bwt_test.go
similarity index 100%
rename from bwt/bwt_test.go
rename to search/bwt/bwt_test.go
diff --git a/bwt/example_test.go b/search/bwt/example_test.go
similarity index 98%
rename from bwt/example_test.go
rename to search/bwt/example_test.go
index 2d1e1b71..4d1ec739 100644
--- a/bwt/example_test.go
+++ b/search/bwt/example_test.go
@@ -4,7 +4,7 @@ import (
 	"fmt"
 	"log"
 
-	"github.com/bebop/poly/bwt"
+	"github.com/bebop/poly/search/bwt"
 	"golang.org/x/exp/slices"
 )
 
diff --git a/bwt/rsa_bitvector.go b/search/bwt/rsa_bitvector.go
similarity index 100%
rename from bwt/rsa_bitvector.go
rename to search/bwt/rsa_bitvector.go
diff --git a/bwt/rsa_bitvector_test.go b/search/bwt/rsa_bitvector_test.go
similarity index 100%
rename from bwt/rsa_bitvector_test.go
rename to search/bwt/rsa_bitvector_test.go
diff --git a/bwt/wavelet.go b/search/bwt/wavelet.go
similarity index 100%
rename from bwt/wavelet.go
rename to search/bwt/wavelet.go
diff --git a/bwt/wavelet_test.go b/search/bwt/wavelet_test.go
similarity index 100%
rename from bwt/wavelet_test.go
rename to search/bwt/wavelet_test.go
diff --git a/mash/example_test.go b/search/mash/example_test.go
similarity index 91%
rename from mash/example_test.go
rename to search/mash/example_test.go
index 76a5db61..e307054c 100644
--- a/mash/example_test.go
+++ b/search/mash/example_test.go
@@ -3,7 +3,7 @@ package mash_test
 import (
 	"fmt"
 
-	"github.com/bebop/poly/mash"
+	"github.com/bebop/poly/search/mash"
 )
 
 func ExampleMash() {
diff --git a/mash/mash.go b/search/mash/mash.go
similarity index 100%
rename from mash/mash.go
rename to search/mash/mash.go
diff --git a/mash/mash_test.go b/search/mash/mash_test.go
similarity index 98%
rename from mash/mash_test.go
rename to search/mash/mash_test.go
index f22f4715..b5810a9d 100644
--- a/mash/mash_test.go
+++ b/search/mash/mash_test.go
@@ -3,7 +3,7 @@ package mash_test
 import (
 	"testing"
 
-	"github.com/bebop/poly/mash"
+	"github.com/bebop/poly/search/mash"
 )
 
 func TestMash(t *testing.T) {