From 04a92aada00fd5a3b06aa623463db96fbe5ab6e9 Mon Sep 17 00:00:00 2001
From: araikes <adam.raikes@gmail.com>
Date: Tue, 5 Sep 2017 14:18:58 -0700
Subject: [PATCH] Renamed folder

added init.py
---
 .idea/misc.xml                    |  12 +--
 .idea/workspace.xml               | 171 +++++++++++++-----------------
 physComplex/__init__.py           |   0
 {code => physComplex}/afa.py      |   0
 {code => physComplex}/dfa.py      |   0
 {code => physComplex}/entropy.py  |   0
 {code => physComplex}/spectral.py |   0
 7 files changed, 76 insertions(+), 107 deletions(-)
 create mode 100644 physComplex/__init__.py
 rename {code => physComplex}/afa.py (100%)
 rename {code => physComplex}/dfa.py (100%)
 rename {code => physComplex}/entropy.py (100%)
 rename {code => physComplex}/spectral.py (100%)

diff --git a/.idea/misc.xml b/.idea/misc.xml
index 9c17c2c..64af78d 100644
--- a/.idea/misc.xml
+++ b/.idea/misc.xml
@@ -1,16 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
-  <component name="ProjectLevelVcsManager" settingsEditedManually="false">
-    <OptionsSetting value="true" id="Add" />
-    <OptionsSetting value="true" id="Remove" />
-    <OptionsSetting value="true" id="Checkout" />
-    <OptionsSetting value="true" id="Update" />
-    <OptionsSetting value="true" id="Status" />
-    <OptionsSetting value="true" id="Edit" />
-    <ConfirmationsSetting value="0" id="Add" />
-    <ConfirmationsSetting value="0" id="Remove" />
-  </component>
-  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.5.1 (C:\Users\Adam\Anaconda3\python.exe)" project-jdk-type="Python SDK" />
+  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.6.1 (C:\Users\adamraikes\AppData\Local\Continuum\Anaconda3\python.exe)" project-jdk-type="Python SDK" />
   <component name="PythonCompatibilityInspectionAdvertiser">
     <option name="version" value="1" />
   </component>
diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index 83e15dc..56fbf77 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -2,9 +2,12 @@
 <project version="4">
   <component name="ChangeListManager">
     <list default="true" id="72e344c2-f433-44ac-a1eb-cc4846fbb367" name="Default" comment="">
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/inspectionProfiles/Project_Default.xml" afterPath="$PROJECT_DIR$/.idea/inspectionProfiles/Project_Default.xml" />
+      <change type="DELETED" beforePath="$PROJECT_DIR$/code/afa.py" afterPath="" />
+      <change type="DELETED" beforePath="$PROJECT_DIR$/code/dfa.py" afterPath="" />
+      <change type="DELETED" beforePath="$PROJECT_DIR$/code/entropy.py" afterPath="" />
+      <change type="DELETED" beforePath="$PROJECT_DIR$/code/spectral.py" afterPath="" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/misc.xml" afterPath="$PROJECT_DIR$/.idea/misc.xml" />
       <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="$PROJECT_DIR$/.idea/workspace.xml" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/spectral.py" afterPath="$PROJECT_DIR$/spectral.py" />
     </list>
     <ignored path="physiologic-complexity.iws" />
     <ignored path=".idea/workspace.xml" />
@@ -24,20 +27,25 @@
   </component>
   <component name="FileEditorManager">
     <leaf SIDE_TABS_SIZE_LIMIT_KEY="300">
-      <file leaf-file-name="spectral.py" pinned="false" current-in-tab="true">
-        <entry file="file://$PROJECT_DIR$/spectral.py">
+      <file leaf-file-name="__init__.py" pinned="false" current-in-tab="true">
+        <entry file="file://$PROJECT_DIR$/physComplex/__init__.py">
           <provider selected="true" editor-type-id="text-editor">
-            <state relative-caret-position="306">
-              <caret line="18" column="12" selection-start-line="18" selection-start-column="12" selection-end-line="18" selection-end-column="12" />
-              <folding>
-                <element signature="e#0#39#0" expanded="true" />
-              </folding>
+            <state relative-caret-position="0">
+              <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+              <folding />
             </state>
           </provider>
         </entry>
       </file>
     </leaf>
   </component>
+  <component name="FileTemplateManagerImpl">
+    <option name="RECENT_TEMPLATES">
+      <list>
+        <option value="Python Script" />
+      </list>
+    </option>
+  </component>
   <component name="Git.Settings">
     <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
     <option name="RECENT_BRANCH_BY_REPOSITORY">
@@ -50,6 +58,7 @@
     <option name="CHANGED_PATHS">
       <list>
         <option value="$PROJECT_DIR$/spectral.py" />
+        <option value="$PROJECT_DIR$/code/__init__.py" />
       </list>
     </option>
   </component>
@@ -78,16 +87,6 @@
       </profile-state>
     </entry>
   </component>
-  <component name="ProjectLevelVcsManager" settingsEditedManually="false">
-    <OptionsSetting value="true" id="Add" />
-    <OptionsSetting value="true" id="Remove" />
-    <OptionsSetting value="true" id="Checkout" />
-    <OptionsSetting value="true" id="Update" />
-    <OptionsSetting value="true" id="Status" />
-    <OptionsSetting value="true" id="Edit" />
-    <ConfirmationsSetting value="0" id="Add" />
-    <ConfirmationsSetting value="0" id="Remove" />
-  </component>
   <component name="ProjectView">
     <navigator currentView="ProjectPane" proportions="" version="1">
       <flattenPackages />
@@ -104,6 +103,7 @@
     </navigator>
     <panes>
       <pane id="Scope" />
+      <pane id="Scratches" />
       <pane id="ProjectPane">
         <subPane>
           <PATH>
@@ -111,6 +111,10 @@
               <option name="myItemId" value="physiologic-complexity" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
             </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="physiologic-complexity" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
           </PATH>
           <PATH>
             <PATH_ELEMENT>
@@ -121,16 +125,31 @@
               <option name="myItemId" value="physiologic-complexity" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="physComplex" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
           </PATH>
         </subPane>
       </pane>
-      <pane id="Scratches" />
     </panes>
   </component>
   <component name="PropertiesComponent">
     <property name="settings.editor.selected.configurable" value="com.jetbrains.python.configuration.PyIntegratedToolsModulesConfigurable" />
     <property name="settings.editor.splitter.proportion" value="0.2" />
-    <property name="last_opened_file_path" value="$PROJECT_DIR$" />
+    <property name="last_opened_file_path" value="$PROJECT_DIR$/../Dissertation" />
+  </component>
+  <component name="RunDashboard">
+    <option name="ruleStates">
+      <list>
+        <RuleState>
+          <option name="name" value="ConfigurationTypeDashboardGroupingRule" />
+        </RuleState>
+        <RuleState>
+          <option name="name" value="StatusDashboardGroupingRule" />
+        </RuleState>
+      </list>
+    </option>
   </component>
   <component name="RunManager">
     <configuration default="true" type="PythonConfigurationType" factoryName="Python">
@@ -148,6 +167,7 @@
       <option name="SCRIPT_NAME" value="" />
       <option name="PARAMETERS" value="" />
       <option name="SHOW_COMMAND_LINE" value="false" />
+      <option name="EMULATE_TERMINAL" value="false" />
       <method />
     </configuration>
     <configuration default="true" type="Tox" factoryName="Tox">
@@ -162,7 +182,7 @@
       <module name="physiologic-complexity" />
       <method />
     </configuration>
-    <configuration default="true" type="tests" factoryName="Attests">
+    <configuration default="true" type="tests" factoryName="Doctests">
       <option name="INTERPRETER_OPTIONS" value="" />
       <option name="PARENT_ENVS" value="true" />
       <envs />
@@ -181,7 +201,7 @@
       <option name="USE_PATTERN" value="false" />
       <method />
     </configuration>
-    <configuration default="true" type="tests" factoryName="Doctests">
+    <configuration default="true" type="tests" factoryName="Nosetests">
       <option name="INTERPRETER_OPTIONS" value="" />
       <option name="PARENT_ENVS" value="true" />
       <envs />
@@ -191,16 +211,13 @@
       <option name="ADD_CONTENT_ROOTS" value="true" />
       <option name="ADD_SOURCE_ROOTS" value="true" />
       <module name="physiologic-complexity" />
-      <option name="SCRIPT_NAME" value="" />
-      <option name="CLASS_NAME" value="" />
-      <option name="METHOD_NAME" value="" />
-      <option name="FOLDER_NAME" value="" />
-      <option name="TEST_TYPE" value="TEST_SCRIPT" />
-      <option name="PATTERN" value="" />
-      <option name="USE_PATTERN" value="false" />
+      <option name="_new_regexPattern" value="&quot;&quot;" />
+      <option name="_new_additionalArguments" value="&quot;&quot;" />
+      <option name="_new_target" value="&quot;.&quot;" />
+      <option name="_new_targetType" value="&quot;PATH&quot;" />
       <method />
     </configuration>
-    <configuration default="true" type="tests" factoryName="Nosetests">
+    <configuration default="true" type="tests" factoryName="Unittests">
       <option name="INTERPRETER_OPTIONS" value="" />
       <option name="PARENT_ENVS" value="true" />
       <envs />
@@ -210,18 +227,12 @@
       <option name="ADD_CONTENT_ROOTS" value="true" />
       <option name="ADD_SOURCE_ROOTS" value="true" />
       <module name="physiologic-complexity" />
-      <option name="SCRIPT_NAME" value="" />
-      <option name="CLASS_NAME" value="" />
-      <option name="METHOD_NAME" value="" />
-      <option name="FOLDER_NAME" value="" />
-      <option name="TEST_TYPE" value="TEST_SCRIPT" />
-      <option name="PATTERN" value="" />
-      <option name="USE_PATTERN" value="false" />
-      <option name="PARAMS" value="" />
-      <option name="USE_PARAM" value="false" />
+      <option name="_new_additionalArguments" value="&quot;&quot;" />
+      <option name="_new_target" value="&quot;.&quot;" />
+      <option name="_new_targetType" value="&quot;PATH&quot;" />
       <method />
     </configuration>
-    <configuration default="true" type="tests" factoryName="Unittests">
+    <configuration default="true" type="tests" factoryName="py.test">
       <option name="INTERPRETER_OPTIONS" value="" />
       <option name="PARENT_ENVS" value="true" />
       <envs />
@@ -231,19 +242,13 @@
       <option name="ADD_CONTENT_ROOTS" value="true" />
       <option name="ADD_SOURCE_ROOTS" value="true" />
       <module name="physiologic-complexity" />
-      <option name="SCRIPT_NAME" value="" />
-      <option name="CLASS_NAME" value="" />
-      <option name="METHOD_NAME" value="" />
-      <option name="FOLDER_NAME" value="" />
-      <option name="TEST_TYPE" value="TEST_SCRIPT" />
-      <option name="PATTERN" value="" />
-      <option name="USE_PATTERN" value="false" />
-      <option name="PUREUNITTEST" value="true" />
-      <option name="PARAMS" value="" />
-      <option name="USE_PARAM" value="false" />
+      <option name="_new_keywords" value="&quot;&quot;" />
+      <option name="_new_additionalArguments" value="&quot;&quot;" />
+      <option name="_new_target" value="&quot;.&quot;" />
+      <option name="_new_targetType" value="&quot;PATH&quot;" />
       <method />
     </configuration>
-    <configuration default="true" type="tests" factoryName="py.test">
+    <configuration default="true" type="tests" factoryName="Attests">
       <option name="INTERPRETER_OPTIONS" value="" />
       <option name="PARENT_ENVS" value="true" />
       <envs />
@@ -260,11 +265,6 @@
       <option name="TEST_TYPE" value="TEST_SCRIPT" />
       <option name="PATTERN" value="" />
       <option name="USE_PATTERN" value="false" />
-      <option name="testToRun" value="" />
-      <option name="keywords" value="" />
-      <option name="params" value="" />
-      <option name="USE_PARAM" value="false" />
-      <option name="USE_KEYWORD" value="false" />
       <method />
     </configuration>
   </component>
@@ -294,18 +294,18 @@
   </component>
   <component name="ToolWindowManager">
     <frame x="-8" y="-8" width="1936" height="1056" extended-state="6" />
-    <editor active="true" />
     <layout>
-      <window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.24973656" sideWeight="0.46849757" order="0" side_tool="false" content_ui="combo" />
+      <window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.25799572" sideWeight="0.46849757" order="0" side_tool="false" content_ui="combo" />
       <window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
       <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="7" side_tool="true" content_ui="tabs" />
+      <window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
       <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.32936078" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
       <window_info id="Python Console" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.32936078" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
-      <window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
       <window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
       <window_info id="Terminal" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
-      <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.24973656" sideWeight="0.5315024" order="2" side_tool="true" content_ui="tabs" />
       <window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
+      <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.24973656" sideWeight="0.5315024" order="2" side_tool="true" content_ui="tabs" />
+      <window_info id="Data View" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
       <window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
       <window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
       <window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
@@ -335,53 +335,32 @@
     <watches-manager />
   </component>
   <component name="editorHistoryManager">
-    <entry file="file://$PROJECT_DIR$/spectral.py">
+    <entry file="file://$PROJECT_DIR$/physComplex/__init__.py">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
-          <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
-            <element signature="e#0#39#0" expanded="true" />
-          </folding>
+          <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+          <folding />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/spectral.py">
+    <entry file="file://$PROJECT_DIR$/physComplex/__init__.py">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
-          <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
-            <element signature="e#0#39#0" expanded="true" />
-          </folding>
+          <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+          <folding />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/spectral.py">
+    <entry file="file://$PROJECT_DIR$/spectral.py" />
+    <entry file="file://$PROJECT_DIR$/spectral.py" />
+    <entry file="file://$PROJECT_DIR$/spectral.py" />
+    <entry file="file://$PROJECT_DIR$/spectral.py" />
+    <entry file="file://$PROJECT_DIR$/spectral.py" />
+    <entry file="file://$PROJECT_DIR$/physComplex/__init__.py">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
-          <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
-            <element signature="e#0#39#0" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
-    <entry file="file://$PROJECT_DIR$/spectral.py">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="0">
-          <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
-            <element signature="e#0#39#0" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
-    <entry file="file://$PROJECT_DIR$/spectral.py">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="306">
-          <caret line="18" column="12" selection-start-line="18" selection-start-column="12" selection-end-line="18" selection-end-column="12" />
-          <folding>
-            <element signature="e#0#39#0" expanded="true" />
-          </folding>
+          <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+          <folding />
         </state>
       </provider>
     </entry>
diff --git a/physComplex/__init__.py b/physComplex/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/code/afa.py b/physComplex/afa.py
similarity index 100%
rename from code/afa.py
rename to physComplex/afa.py
diff --git a/code/dfa.py b/physComplex/dfa.py
similarity index 100%
rename from code/dfa.py
rename to physComplex/dfa.py
diff --git a/code/entropy.py b/physComplex/entropy.py
similarity index 100%
rename from code/entropy.py
rename to physComplex/entropy.py
diff --git a/code/spectral.py b/physComplex/spectral.py
similarity index 100%
rename from code/spectral.py
rename to physComplex/spectral.py