From 231d5518f809ccf3f90dfdc8a27645ee00a204bf Mon Sep 17 00:00:00 2001
From: William McLaren <wm2@ebi.ac.uk>
Date: Wed, 19 Jul 2017 13:50:26 +0100
Subject: [PATCH] check otherfeatures present for merged

---
 modules/Bio/EnsEMBL/VEP/AnnotationSourceAdaptor.pm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/Bio/EnsEMBL/VEP/AnnotationSourceAdaptor.pm b/modules/Bio/EnsEMBL/VEP/AnnotationSourceAdaptor.pm
index 2fe58d2ba..ae6a6b5b1 100644
--- a/modules/Bio/EnsEMBL/VEP/AnnotationSourceAdaptor.pm
+++ b/modules/Bio/EnsEMBL/VEP/AnnotationSourceAdaptor.pm
@@ -153,7 +153,7 @@ sub get_all_from_database {
       });
 
       # special case merged
-      if($self->param('merged')) {
+      if($self->param('merged') && $self->get_adaptor('otherfeatures', 'slice')) {
         my $core_type_bak = $self->param('core_type');
         $self->param('core_type', 'otherfeatures');