diff --git a/.github/workflows/gh-pages.yml b/.github/workflows/gh-pages.yml
new file mode 100644
index 0000000..801ea4c
--- /dev/null
+++ b/.github/workflows/gh-pages.yml
@@ -0,0 +1,62 @@
+name: deploy-site
+
+on: pull_request
+
+jobs:
+  deploy-docs:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out code
+      uses: actions/checkout@v3
+
+    # Install dependencies
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.10"
+
+    - name: Install conda environment
+       uses: mamba-org/setup-micromamba@v2
+       with:
+         environment-file: environment.yml
+         environment-name: selection-atlas
+         cache-downloads: true
+         
+    # set up google cloud
+    - id: auth
+      name: Set up Google Cloud authentication
+      uses: google-github-actions/auth@v2
+      with:
+        credentials_json: ${{ secrets.GOOGLE_CREDENTIALS }}
+
+    - name: Set up Google Cloud SDK
+      uses: google-github-actions/setup-gcloud@v2
+      with:
+        version: >= 363.0.0
+
+    - name: Check gcloud CLI
+       run: gcloud info
+
+    - name: Download build from GCS
+       run: |
+           mkdir build
+           gsutil -m rsync -r gs://vo_selection_atlas_dev_us_central1/build/2024-08-21/ build/
+           find build -type f -exec touch {} +
+           find build/notebooks -type f -exec touch {} +
+           find build/notebooks/cohort -type f -exec touch {} +
+
+    - name: Build sel-atlas site
+      uses: snakemake/snakemake-github-action@v1
+      with:
+        directory: '.'
+        snakefile: 'workflow/Snakefile-site-build'
+        args: '--cores 1 --conda-cleanup-pkgs cache'
+        stagein: '' # additional preliminary commands to run (can be multiline)
+        show-disk-usage-on-error: true
+    
+    # Push the book's HTML to github-pages
+    - name: GitHub Pages action
+      uses: peaceiris/actions-gh-pages@v3
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: docs/_build/html
diff --git a/.github/workflows/test-build.yml b/.github/workflows/test-build.yml
index 086a516..acaaf02 100644
--- a/.github/workflows/test-build.yml
+++ b/.github/workflows/test-build.yml
@@ -25,17 +25,22 @@ jobs:
           key: results_cache_20230512
 
       - name: Install conda environment
-        uses: mamba-org/provision-with-micromamba@main
+        uses: mamba-org/setup-micromamba@v2
         with:
           environment-file: environment.yml
           environment-name: selection-atlas
           cache-downloads: true
 
-      - name: Run snakemake workflow
+      - name: Run analysis snakemake workflow
         shell: bash -l {0}
         run: |
-          snakemake -c1 --configfile ci/config.yaml
+          snakemake -c1 --configfile ci/config.yaml --snakefile workflow/Snakefile-analysis
 
+      - name: Run site build snakemake workflow
+        shell: bash -l {0}
+        run: |
+          snakemake -c1 --configfile ci/config.yaml --snakefile workflow/Snakefile-site-build
+          
       - name: Save GCS cache
         uses: actions/cache/save@v3
         if: always()
diff --git a/.gitignore b/.gitignore
index de473a0..171e6c7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -12,6 +12,7 @@ docs/genome/*.ipynb
 docs/cohort/*.ipynb
 docs/_toc.yml
 log
+selection-atlas.html
 
 # Byte-compiled / optimized / DLL files
 __pycache__/
diff --git a/README.md b/README.md
index 99c85d3..3e01b2c 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,5 @@
 # selection-atlas
 
-Here be dragons.
-
 Development docs:
 
 -   [Implementation plan](https://docs.google.com/document/d/1VvVZqIQWP8a2zH_CqTgKOp7_KotiJX8bcQ-RWfxiEj8/edit?usp=sharing)
@@ -17,14 +15,14 @@ The file `requirements.yml` has the dependencies required to build the site. To
 To create and activate an environment on your own computer:
 
 ```
-mamba env create --force --file environment.yml
-mamba activate selection-atlas
+mamba env create --file environment.yml
+conda activate selection-atlas
 ```
 
 To create and activate an environment on datalab-bespin:
 
 ```
-mamba env create --force --prefix=${HOME}/envs/selection-atlas --file environment.yml
+mamba env create --prefix=${HOME}/envs/selection-atlas --file environment.yml
 conda activate ${HOME}/envs/selection-atlas
 ```
 
@@ -33,21 +31,65 @@ If you need to add or upgrade a package, edit `requirements.yml`. **Do not edit
 To upgrade `environment.yml`:
 
 ```
-mamba env create --force --file requirements.yml
+mamba env create --file requirements.yml
 mamba env export -f environment.yml -n selection-atlas-requirements --override-channels --channel conda-forge --channel bioconda
 sed -i "s/selection-atlas-requirements/selection-atlas/" environment.yml
 ```
 
-## Running the workflow
+## Authenticating with Google Cloud
+
+With the selection-atlas environment activated:
+
+```
+gcloud auth login
+gcloud auth application-default login
+```
+
+
+## Running the analysis workflow
+
+See the file `workflow/config.yaml` for workflow configuration.
 
 If running on your local system with GCS caching enabled, you'll need to run the build without any parallelisation:
 
 ```
-snakemake -c1
+snakemake -c1 --snakefile workflow/Snakefile-analysis
 ```
 
 If running on Google Cloud and GCS caching is disabled, you can try running with parallelisation, e.g.:
 
 ```
-snakemake -c4
+snakemake -c4 --snakefile workflow/Snakefile-analysis
+```
+
+
+## Saving/restoring a successful workflow run
+
+After a successful workflow run, copy the workflow outputs to GCS. This will allow you or other developers to continue working to improve the site based on these outputs, without having to do a complete workflow run themselves. 
+
+With the selection-atlas environment activated, copy workflow outputs to GCS:
+
+```
+gsutil -m rsync -r build/ gs://vo_selection_atlas_dev_us_central1/build/2024-08-21/
+```
+
+In the above command, "2024-08-21" is a build identifier. If you make any significant changes and rerun the workflow, use a new build identifier.
+
+To restore outputs from a previous workflow run to your local filesystem:
+
+```
+rm -r build/*
+gsutil -m rsync -r gs://vo_selection_atlas_dev_us_central1/build/2024-08-21/ build/
+find build -type f -exec touch {} +
+find build/notebooks -type f -exec touch {} +
+find build/notebooks/cohort -type f -exec touch {} +
+
+```
+
+## Running the site-build workflow
+
+See the file `workflow/config.yaml` for workflow configuration.
+
 ```
+snakemake -c1 --snakefile workflow/Snakefile-site-build
+```
\ No newline at end of file
diff --git a/environment.yml b/environment.yml
index f81acbd..619194a 100644
--- a/environment.yml
+++ b/environment.yml
@@ -5,556 +5,545 @@ channels:
 dependencies:
   - _libgcc_mutex=0.1=conda_forge
   - _openmp_mutex=4.5=2_gnu
-  - accessible-pygments=0.0.4=pyhd8ed1ab_0
-  - aioeasywebdav=2.4.0=pyha770c72_0
-  - aiohttp=3.7.4.post0=py310h6acc77f_1
-  - alabaster=0.7.13=pyhd8ed1ab_0
-  - alsa-lib=1.2.8=h166bdaf_0
-  - amply=0.1.5=pyhd8ed1ab_0
-  - ansiwrap=0.8.4=py_0
-  - anyio=3.7.0=pyhd8ed1ab_1
+  - accessible-pygments=0.0.5=pyhd8ed1ab_0
+  - aiohttp=3.9.5=py311h459d7ec_0
+  - aiosignal=1.3.1=pyhd8ed1ab_0
+  - alabaster=0.7.16=pyhd8ed1ab_0
+  - alsa-lib=1.2.12=h4ab18f5_0
+  - amply=0.1.6=pyhd8ed1ab_0
+  - ansicolors=1.1.8=pyhd8ed1ab_0
+  - anyio=4.4.0=pyhd8ed1ab_0
   - appdirs=1.4.4=pyh9f0ad1d_0
-  - argcomplete=3.0.8=pyhd8ed1ab_0
-  - argon2-cffi=21.3.0=pyhd8ed1ab_0
-  - argon2-cffi-bindings=21.2.0=py310h5764c6d_3
+  - apricot-select=0.6.1=pyhd8ed1ab_0
+  - argon2-cffi=23.1.0=pyhd8ed1ab_0
+  - argon2-cffi-bindings=21.2.0=py311h459d7ec_4
+  - argparse-dataclass=2.0.0=pyhd8ed1ab_0
+  - arrow=1.3.0=pyhd8ed1ab_0
   - asciitree=0.3.3=py_2
-  - asteval=0.9.29=pyhd8ed1ab_0
-  - asttokens=2.2.1=pyhd8ed1ab_0
-  - async-lru=2.0.2=pyhd8ed1ab_0
-  - async-timeout=3.0.1=py_1000
+  - asteval=1.0.2=pyhd8ed1ab_0
+  - asttokens=2.4.1=pyhd8ed1ab_0
+  - async-lru=2.0.4=pyhd8ed1ab_0
   - attmap=0.13.2=pyhd8ed1ab_0
-  - attr=2.5.1=h166bdaf_1
-  - attrs=21.4.0=pyhd8ed1ab_0
-  - aws-c-auth=0.6.27=he072965_1
-  - aws-c-cal=0.5.26=hf677bf3_1
-  - aws-c-common=0.8.19=hd590300_0
-  - aws-c-compression=0.2.16=hbad4bc6_7
-  - aws-c-event-stream=0.2.20=hb4b372c_7
-  - aws-c-http=0.7.7=h2632f9a_4
-  - aws-c-io=0.13.21=h9fef7b8_5
-  - aws-c-mqtt=0.8.11=h2282364_1
-  - aws-c-s3=0.3.0=hcb5a9b2_2
-  - aws-c-sdkutils=0.1.9=hbad4bc6_2
-  - aws-checksums=0.1.14=hbad4bc6_7
-  - aws-crt-cpp=0.20.2=he0fdcb3_0
-  - aws-sdk-cpp=1.10.57=h059227d_13
-  - babel=2.12.1=pyhd8ed1ab_1
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=pyhd8ed1ab_3
-  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
-  - bcrypt=3.2.2=py310h5764c6d_1
-  - beautifulsoup4=4.12.2=pyha770c72_0
-  - biopython=1.81=py310h1fa729e_0
-  - black=23.3.0=py310hff52083_1
-  - bleach=6.0.0=pyhd8ed1ab_0
-  - blinker=1.6.2=pyhd8ed1ab_0
-  - blosc=1.21.4=h0f2a231_0
-  - bokeh=3.1.1=pyhd8ed1ab_0
-  - boltons=23.0.0=pyhd8ed1ab_0
-  - boost-cpp=1.78.0=h6582d0a_3
-  - boto=2.49.0=py_0
-  - boto3=1.26.144=pyhd8ed1ab_0
-  - botocore=1.29.145=pyhd8ed1ab_0
-  - branca=0.6.0=pyhd8ed1ab_0
-  - brotli=1.0.9=h166bdaf_8
-  - brotli-bin=1.0.9=h166bdaf_8
-  - brotlipy=0.7.0=py310h5764c6d_1005
-  - bzip2=1.0.8=h7f98852_4
-  - c-ares=1.19.1=hd590300_0
-  - ca-certificates=2023.5.7=hbcca054_0
+  - attrs=24.2.0=pyh71513ae_0
+  - aws-c-auth=0.7.25=h15d0e8c_6
+  - aws-c-cal=0.7.3=h8dac057_2
+  - aws-c-common=0.9.27=h4bc722e_0
+  - aws-c-compression=0.2.18=h038f3f9_10
+  - aws-c-event-stream=0.4.3=h570d160_0
+  - aws-c-http=0.8.7=ha1f794c_4
+  - aws-c-io=0.14.18=hf5b9b93_6
+  - aws-c-mqtt=0.10.4=hc14a930_17
+  - aws-c-s3=0.6.4=h558cea2_8
+  - aws-c-sdkutils=0.1.19=h038f3f9_2
+  - aws-checksums=0.1.18=h038f3f9_10
+  - aws-crt-cpp=0.27.5=h6e4e78f_8
+  - aws-sdk-cpp=1.11.379=hce093eb_4
+  - azure-core-cpp=1.13.0=h935415a_0
+  - azure-identity-cpp=1.8.0=hd126650_2
+  - azure-storage-blobs-cpp=12.12.0=hd2e3451_0
+  - azure-storage-common-cpp=12.7.0=h10ac4d7_1
+  - azure-storage-files-datalake-cpp=12.11.0=h325d260_1
+  - babel=2.14.0=pyhd8ed1ab_0
+  - beautifulsoup4=4.12.3=pyha770c72_0
+  - biopython=1.84=py311h331c9d8_0
+  - bleach=6.1.0=pyhd8ed1ab_0
+  - blinker=1.8.2=pyhd8ed1ab_0
+  - blosc=1.21.6=hef167b5_0
+  - bokeh=3.5.1=pyhd8ed1ab_0
+  - branca=0.7.2=pyhd8ed1ab_0
+  - brotli=1.1.0=hd590300_1
+  - brotli-bin=1.1.0=hd590300_1
+  - brotli-python=1.1.0=py311hb755f60_1
+  - bzip2=1.0.8=h4bc722e_7
+  - c-ares=1.33.0=ha66036c_0
+  - ca-certificates=2024.7.4=hbcca054_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
-  - cachetools=5.3.0=pyhd8ed1ab_0
-  - cairo=1.16.0=hbbf8b49_1016
-  - certifi=2023.5.7=pyhd8ed1ab_0
-  - cffi=1.15.1=py310h255011f_3
-  - cfitsio=4.2.0=hd9d235c_0
-  - chardet=4.0.0=py310hff52083_3
-  - charset-normalizer=3.1.0=pyhd8ed1ab_0
-  - click=8.1.3=unix_pyhd8ed1ab_2
-  - click-plugins=1.1.1=py_0
-  - cligj=0.7.2=pyhd8ed1ab_1
-  - cloudpickle=2.2.1=pyhd8ed1ab_0
-  - coin-or-cbc=2.10.10=h9002f0b_0
+  - cachetools=5.5.0=pyhd8ed1ab_0
+  - cairo=1.18.0=hebfffa5_3
+  - certifi=2024.7.4=pyhd8ed1ab_0
+  - cffi=1.17.0=py311ha8e6434_0
+  - cfitsio=4.4.1=hf8ad068_0
+  - charset-normalizer=3.3.2=pyhd8ed1ab_0
+  - click=8.1.7=unix_pyh707e725_0
+  - cloudpickle=3.0.0=pyhd8ed1ab_0
+  - coin-or-cbc=2.10.11=h56f689f_0
   - coin-or-cgl=0.60.7=h516709c_0
   - coin-or-clp=1.17.8=h1ee7a9c_0
-  - coin-or-osi=0.108.8=ha2443b9_0
-  - coin-or-utils=2.11.9=hee58242_0
-  - coincbc=2.10.10=0_metapackage
+  - coin-or-osi=0.108.11=h6e6398e_0
+  - coin-or-utils=2.11.12=h00a8a60_0
+  - coincbc=2.10.11=0_metapackage
   - colorama=0.4.6=pyhd8ed1ab_0
-  - comm=0.1.3=pyhd8ed1ab_0
-  - conda=23.3.1=py310hff52083_0
-  - conda-package-handling=2.0.2=pyh38be061_0
-  - conda-package-streaming=0.8.0=pyhd8ed1ab_0
-  - configargparse=1.5.3=pyhd8ed1ab_0
+  - comm=0.2.2=pyhd8ed1ab_0
+  - conda-inject=1.3.2=pyhd8ed1ab_0
+  - configargparse=1.7=pyhd8ed1ab_0
   - connection_pool=0.0.3=pyhd3deb0d_0
-  - contourpy=1.0.7=py310hdf3cbec_0
-  - crcmod=1.7=py310h5764c6d_1009
-  - cryptography=41.0.0=py310h75e40e8_0
-  - curl=8.1.2=h409715c_0
-  - cycler=0.11.0=pyhd8ed1ab_0
-  - cytoolz=0.12.0=py310h5764c6d_1
-  - dask=2023.5.1=pyhd8ed1ab_0
-  - dask-core=2023.5.1=pyhd8ed1ab_0
+  - contourpy=1.2.1=py311h9547e67_0
+  - cryptography=43.0.0=py311hc6616f6_0
+  - cycler=0.12.1=pyhd8ed1ab_0
+  - cytoolz=0.12.3=py311h459d7ec_0
+  - dask=2024.8.1=pyhd8ed1ab_0
+  - dask-core=2024.8.1=pyhd8ed1ab_0
+  - dask-expr=1.1.11=pyhd8ed1ab_0
   - dataclasses=0.8=pyhc8e2a94_3
-  - datrie=0.8.2=py310h5764c6d_6
+  - datrie=0.8.2=py311h459d7ec_7
   - dbus=1.13.6=h5008d03_3
-  - debugpy=1.6.7=py310heca2aa9_0
+  - debugpy=1.8.5=py311hf86e51f_0
   - decorator=5.1.1=pyhd8ed1ab_0
   - defusedxml=0.7.1=pyhd8ed1ab_0
-  - distributed=2023.5.1=pyhd8ed1ab_0
-  - docutils=0.17.1=py310hff52083_3
-  - dpath=2.1.6=pyha770c72_0
-  - dropbox=11.36.0=pyhd8ed1ab_0
+  - dill=0.3.8=pyhd8ed1ab_0
+  - distributed=2024.8.1=pyhd8ed1ab_0
+  - docutils=0.20.1=py311h38be061_3
+  - double-conversion=3.3.0=h59595ed_0
+  - dpath=2.2.0=pyha770c72_0
+  - eido=0.2.2=pyhd8ed1ab_0
   - entrypoints=0.4=pyhd8ed1ab_0
-  - exceptiongroup=1.1.1=pyhd8ed1ab_0
-  - executing=1.2.0=pyhd8ed1ab_0
-  - expat=2.5.0=hcb278e6_1
+  - exceptiongroup=1.2.2=pyhd8ed1ab_0
+  - executing=2.0.1=pyhd8ed1ab_0
+  - expat=2.6.2=h59595ed_0
   - fasteners=0.17.3=pyhd8ed1ab_0
-  - filechunkio=1.8=py_2
-  - filelock=3.12.0=pyhd8ed1ab_0
-  - fiona=1.9.4=py310h111440e_0
-  - flit-core=3.9.0=pyhd8ed1ab_0
-  - fmt=9.1.0=h924138e_0
-  - folium=0.14.0=pyhd8ed1ab_0
+  - filelock=3.15.4=pyhd8ed1ab_0
+  - fmt=11.0.2=h434a139_0
+  - folium=0.17.0=pyhd8ed1ab_0
   - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
   - font-ttf-inconsolata=3.000=h77eed37_0
   - font-ttf-source-code-pro=2.038=h77eed37_0
-  - font-ttf-ubuntu=0.83=hab24e00_0
+  - font-ttf-ubuntu=0.83=h77eed37_2
   - fontconfig=2.14.2=h14ed4e7_0
   - fonts-conda-ecosystem=1=0
   - fonts-conda-forge=1=0
-  - fonttools=4.39.4=py310h2372a71_0
-  - freetype=2.12.1=hca18f0e_1
-  - freexl=1.0.6=h166bdaf_1
-  - fsspec=2023.5.0=pyh1a96a4e_0
-  - ftputil=5.0.4=pyhd8ed1ab_0
-  - future=0.18.3=pyhd8ed1ab_0
-  - gcs-oauth2-boto-plugin=3.0=pyhd8ed1ab_0
-  - gcsfs=2023.5.0=pyhd8ed1ab_0
-  - gdal=3.7.0=py310h52aca19_1
-  - geopandas=0.13.0=pyhd8ed1ab_0
-  - geopandas-base=0.13.0=pyha770c72_0
-  - geos=3.11.2=hcb278e6_0
-  - geotiff=1.7.1=h480ec47_8
-  - gettext=0.21.1=h27087fc_0
+  - fonttools=4.53.1=py311h61187de_0
+  - fqdn=1.5.1=pyhd8ed1ab_0
+  - freetype=2.12.1=h267a509_2
+  - freexl=2.0.0=h743c826_0
+  - frozenlist=1.4.1=py311h459d7ec_0
+  - fsspec=2024.6.1=pyhff2d567_0
+  - future=1.0.0=pyhd8ed1ab_0
+  - gcsfs=2024.6.1=pyhd8ed1ab_0
+  - gdal=3.9.2=py311hb17e472_0
+  - geopandas=1.0.1=pyhd8ed1ab_0
+  - geopandas-base=1.0.1=pyha770c72_0
+  - geos=3.12.2=he02047a_1
+  - geotiff=1.7.3=hf7fa9e8_2
   - gflags=2.2.2=he1b5a44_1004
-  - giflib=5.2.1=h0b41bf4_3
-  - gitdb=4.0.10=pyhd8ed1ab_0
-  - gitpython=3.1.31=pyhd8ed1ab_0
-  - glib=2.76.3=hfc55251_0
-  - glib-tools=2.76.3=hfc55251_0
-  - glog=0.6.0=h6f12383_0
-  - google-api-core=2.11.0=pyhd8ed1ab_0
-  - google-api-python-client=2.88.0=pyhd8ed1ab_0
-  - google-apitools=0.5.32=pyhd8ed1ab_0
-  - google-auth=2.19.0=pyh1a96a4e_0
-  - google-auth-httplib2=0.1.0=pyhd8ed1ab_1
-  - google-auth-oauthlib=1.0.0=pyhd8ed1ab_0
-  - google-cloud-core=2.3.2=pyhd8ed1ab_0
-  - google-cloud-storage=2.9.0=pyh1a96a4e_0
-  - google-crc32c=1.1.2=py310he8fe98e_4
-  - google-reauth=0.1.1=pyhd3deb0d_0
-  - google-resumable-media=2.5.0=pyhd8ed1ab_0
-  - googleapis-common-protos=1.57.1=pyhd8ed1ab_0
-  - graphite2=1.3.13=h58526e2_1001
-  - greenlet=2.0.2=py310hc6cd4ac_1
-  - grpcio=1.54.2=py310heca2aa9_2
-  - gst-plugins-base=1.22.3=h938bd60_1
-  - gstreamer=1.22.3=h977cf35_1
-  - gsutil=5.24=pyhd8ed1ab_0
-  - h5py=3.8.0=nompi_py310ha66b2ad_101
-  - harfbuzz=7.3.0=hdb3a94d_0
-  - hdf4=4.2.15=h501b40f_6
-  - hdf5=1.14.0=nompi_hb72d44e_103
-  - httplib2=0.20.4=pyhd8ed1ab_0
-  - humanfriendly=10.0=py310hff52083_4
-  - icu=72.1=hcb278e6_0
-  - idna=3.4=pyhd8ed1ab_0
+  - giflib=5.2.2=hd590300_0
+  - gitdb=4.0.11=pyhd8ed1ab_0
+  - gitpython=3.1.43=pyhd8ed1ab_0
+  - glog=0.7.1=hbabe93e_0
+  - gmp=6.3.0=hac33072_2
+  - gmpy2=2.1.5=py311hc4f1f91_1
+  - google-api-core=2.19.1=pyhd8ed1ab_0
+  - google-auth=2.33.0=pyhff2d567_0
+  - google-auth-oauthlib=1.2.1=pyhd8ed1ab_0
+  - google-cloud-core=2.4.1=pyhd8ed1ab_0
+  - google-cloud-sdk=489.0.0=py311h38be061_0
+  - google-cloud-storage=2.18.2=pyhff2d567_0
+  - google-crc32c=1.1.2=py311h9b08b9c_5
+  - google-resumable-media=2.7.2=pyhd8ed1ab_1
+  - googleapis-common-protos=1.63.2=pyhd8ed1ab_0
+  - graphite2=1.3.13=h59595ed_1003
+  - greenlet=3.0.3=py311hb755f60_0
+  - grpcio=1.62.2=py311ha6695c7_0
+  - h11=0.14.0=pyhd8ed1ab_0
+  - h2=4.1.0=pyhd8ed1ab_0
+  - h5py=3.11.0=nompi_py311h439e445_102
+  - harfbuzz=9.0.0=hda332d3_1
+  - hdf4=4.2.15=h2a13503_7
+  - hdf5=1.14.3=nompi_hdf9ad27_105
+  - hpack=4.0.0=pyh9f0ad1d_0
+  - httpcore=1.0.5=pyhd8ed1ab_0
+  - httpx=0.27.0=pyhd8ed1ab_0
+  - humanfriendly=10.0=pyhd8ed1ab_6
+  - hyperframe=6.0.1=pyhd8ed1ab_0
+  - icu=75.1=he02047a_0
+  - idna=3.7=pyhd8ed1ab_0
   - imagesize=1.4.1=pyhd8ed1ab_0
-  - importlib_metadata=6.6.0=hd8ed1ab_0
-  - importlib_resources=5.12.0=pyhd8ed1ab_0
+  - immutables=0.20=py311h459d7ec_1
+  - importlib-metadata=8.4.0=pyha770c72_0
+  - importlib_metadata=8.4.0=hd8ed1ab_0
+  - importlib_resources=6.4.3=pyhd8ed1ab_0
   - iniconfig=2.0.0=pyhd8ed1ab_0
-  - ipykernel=6.23.1=pyh210e3f2_0
-  - ipyleaflet=0.17.2=pyhd8ed1ab_0
-  - ipython=8.13.2=pyh41d4057_0
-  - ipywidgets=8.0.6=pyhd8ed1ab_0
+  - ipykernel=6.29.5=pyh3099207_0
+  - ipyleaflet=0.19.2=pyhd8ed1ab_0
+  - ipython=8.26.0=pyh707e725_0
+  - ipywidgets=8.1.3=pyhd8ed1ab_0
   - iso3166=2.1.1=pyhd8ed1ab_0
-  - jedi=0.18.2=pyhd8ed1ab_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - jmespath=1.0.1=pyhd8ed1ab_0
-  - joblib=1.2.0=pyhd8ed1ab_0
-  - json-c=0.16=hc379101_0
-  - json5=0.9.5=pyh9f0ad1d_0
-  - jsonpatch=1.32=pyhd8ed1ab_0
-  - jsonpointer=2.0=py_0
-  - jsonschema=4.17.3=pyhd8ed1ab_0
-  - jupyter-book=0.15.1=pyhd8ed1ab_0
-  - jupyter-cache=0.6.1=pyhd8ed1ab_0
-  - jupyter-lsp=2.2.0=pyhd8ed1ab_0
-  - jupyter_client=8.2.0=pyhd8ed1ab_0
-  - jupyter_core=5.3.0=py310hff52083_0
-  - jupyter_events=0.6.3=pyhd8ed1ab_0
-  - jupyter_server=2.6.0=pyhd8ed1ab_0
-  - jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
-  - jupyterlab=4.0.1=pyhd8ed1ab_0
-  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
-  - jupyterlab_server=2.22.1=pyhd8ed1ab_0
-  - jupyterlab_widgets=3.0.7=pyhd8ed1ab_1
-  - kealib=1.5.1=h3845be2_3
+  - isoduration=20.11.0=pyhd8ed1ab_0
+  - jedi=0.19.1=pyhd8ed1ab_0
+  - jinja2=3.1.4=pyhd8ed1ab_0
+  - joblib=1.4.2=pyhd8ed1ab_0
+  - json-c=0.17=h1220068_1
+  - json5=0.9.25=pyhd8ed1ab_0
+  - jsonpointer=3.0.0=py311h38be061_0
+  - jsonschema=4.23.0=pyhd8ed1ab_0
+  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
+  - jsonschema-with-format-nongpl=4.23.0=hd8ed1ab_0
+  - jupyter-book=1.0.2=pyhd8ed1ab_0
+  - jupyter-cache=1.0.0=pyhd8ed1ab_0
+  - jupyter-lsp=2.2.5=pyhd8ed1ab_0
+  - jupyter_client=8.6.2=pyhd8ed1ab_0
+  - jupyter_core=5.7.2=py311h38be061_0
+  - jupyter_events=0.10.0=pyhd8ed1ab_0
+  - jupyter_leaflet=0.19.2=pyhd8ed1ab_0
+  - jupyter_server=2.14.2=pyhd8ed1ab_0
+  - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
+  - jupyterlab=4.2.4=pyhd8ed1ab_0
+  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
+  - jupyterlab_server=2.27.3=pyhd8ed1ab_0
+  - jupyterlab_widgets=3.0.11=pyhd8ed1ab_0
+  - kealib=1.5.3=hee9dde6_1
   - keyutils=1.6.1=h166bdaf_0
-  - kiwisolver=1.4.4=py310hbf28c38_1
-  - krb5=1.20.1=h81ceb04_0
-  - lame=3.100=h166bdaf_1003
+  - kiwisolver=1.4.5=py311h9547e67_1
+  - krb5=1.21.3=h659f571_0
   - latexcodec=2.0.1=pyh9f0ad1d_0
-  - lcms2=2.15=haa2dc70_1
-  - ld_impl_linux-64=2.40=h41732ed_0
+  - lcms2=2.16=hb7c19ff_0
+  - ld_impl_linux-64=2.40=hf3520f5_7
   - lerc=4.0.0=h27087fc_0
-  - libabseil=20230125.2=cxx17_h59595ed_2
-  - libaec=1.0.6=hcb278e6_1
-  - libarchive=3.6.2=h039dbb9_1
-  - libarrow=12.0.0=h96638e8_5_cpu
-  - libblas=3.9.0=16_linux64_openblas
-  - libbrotlicommon=1.0.9=h166bdaf_8
-  - libbrotlidec=1.0.9=h166bdaf_8
-  - libbrotlienc=1.0.9=h166bdaf_8
-  - libcap=2.67=he9d0100_0
-  - libcblas=3.9.0=16_linux64_openblas
-  - libclang=15.0.7=default_h7634d5b_2
-  - libclang13=15.0.7=default_h9986a30_2
+  - libabseil=20240116.2=cxx17_he02047a_1
+  - libaec=1.1.3=h59595ed_0
+  - libarchive=3.7.4=hfca40fe_0
+  - libarrow=17.0.0=h8756180_8_cpu
+  - libarrow-acero=17.0.0=he02047a_8_cpu
+  - libarrow-dataset=17.0.0=he02047a_8_cpu
+  - libarrow-substrait=17.0.0=hc9a23c6_8_cpu
+  - libblas=3.9.0=23_linux64_openblas
+  - libbrotlicommon=1.1.0=hd590300_1
+  - libbrotlidec=1.1.0=hd590300_1
+  - libbrotlienc=1.1.0=hd590300_1
+  - libcblas=3.9.0=23_linux64_openblas
+  - libclang-cpp18.1=18.1.8=default_hf981a13_2
+  - libclang13=18.1.8=default_h9def88c_2
   - libcrc32c=1.1.2=h9c3ff4c_0
-  - libcups=2.3.3=h36d4200_3
-  - libcurl=8.1.2=h409715c_0
-  - libdeflate=1.18=h0b41bf4_0
+  - libcups=2.3.3=h4637d8d_4
+  - libcurl=8.9.1=hdb1bdb2_0
+  - libdeflate=1.21=h4bc722e_0
+  - libdrm=2.4.122=h4ab18f5_0
   - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=h516909a_1
-  - libevent=2.1.12=h3358134_0
-  - libexpat=2.5.0=hcb278e6_1
+  - libev=4.33=hd590300_2
+  - libevent=2.1.12=hf998b51_1
+  - libexpat=2.6.2=h59595ed_0
   - libffi=3.4.2=h7f98852_5
-  - libflac=1.4.2=h27087fc_0
-  - libgcc-ng=12.2.0=h65d4601_19
-  - libgcrypt=1.10.1=h166bdaf_0
-  - libgdal=3.7.0=h9f4e061_1
-  - libgfortran-ng=12.2.0=h69a702a_19
-  - libgfortran5=12.2.0=h337968e_19
-  - libglib=2.76.3=hebfc3b9_0
-  - libgomp=12.2.0=h65d4601_19
-  - libgoogle-cloud=2.10.1=hac9eb74_1
-  - libgpg-error=1.46=h620e276_0
-  - libgrpc=1.54.2=hb20ce57_2
-  - libiconv=1.17=h166bdaf_0
-  - libjpeg-turbo=2.1.5.1=h0b41bf4_0
-  - libkml=1.3.0=h37653c0_1015
-  - liblapack=3.9.0=16_linux64_openblas
-  - liblapacke=3.9.0=16_linux64_openblas
-  - libllvm14=14.0.6=hcd5def8_2
-  - libllvm15=15.0.7=h5cf9203_2
-  - libmamba=1.4.2=hcea66bb_0
-  - libmambapy=1.4.2=py310h1428755_0
-  - libnetcdf=4.9.2=nompi_h0f3d0bb_105
-  - libnghttp2=1.52.0=h61bc06f_0
-  - libnsl=2.0.0=h7f98852_0
-  - libnuma=2.0.16=h0b41bf4_1
-  - libogg=1.3.4=h7f98852_1
-  - libopenblas=0.3.21=pthreads_h78a6416_3
-  - libopus=1.3.1=h7f98852_1
-  - libpng=1.6.39=h753d276_0
-  - libpq=15.3=hbcd7760_1
-  - libprotobuf=3.21.12=h3eb15da_0
-  - librttopo=1.1.0=h0d5128d_13
-  - libsndfile=1.2.0=hb75c966_0
+  - libgcc-ng=14.1.0=h77fa898_0
+  - libgdal=3.9.2=ha770c72_0
+  - libgdal-core=3.9.2=hba09cee_0
+  - libgdal-fits=3.9.2=hdd6600c_0
+  - libgdal-grib=3.9.2=h5f34788_0
+  - libgdal-hdf4=3.9.2=ha39a594_0
+  - libgdal-hdf5=3.9.2=ha2ed5f0_0
+  - libgdal-jp2openjpeg=3.9.2=h2ebfdf0_0
+  - libgdal-kea=3.9.2=h2b45729_0
+  - libgdal-netcdf=3.9.2=h94e7027_0
+  - libgdal-pdf=3.9.2=h0fa2cb4_0
+  - libgdal-pg=3.9.2=he047751_0
+  - libgdal-postgisraster=3.9.2=he047751_0
+  - libgdal-tiledb=3.9.2=h9d8aadb_0
+  - libgdal-xls=3.9.2=h062f1c4_0
+  - libgfortran-ng=14.1.0=h69a702a_0
+  - libgfortran5=14.1.0=hc5f4f2c_0
+  - libglib=2.80.3=h315aac3_2
+  - libgomp=14.1.0=h77fa898_0
+  - libgoogle-cloud=2.28.0=h26d7fe4_0
+  - libgoogle-cloud-storage=2.28.0=ha262f82_0
+  - libgrpc=1.62.2=h15f2491_0
+  - libiconv=1.17=hd590300_2
+  - libjpeg-turbo=3.0.0=hd590300_1
+  - libkml=1.3.0=hbbc8833_1020
+  - liblapack=3.9.0=23_linux64_openblas
+  - liblapacke=3.9.0=23_linux64_openblas
+  - libllvm14=14.0.6=hcd5def8_4
+  - libllvm18=18.1.8=h8b73ec9_2
+  - libnetcdf=4.9.2=nompi_h135f659_114
+  - libnghttp2=1.58.0=h47da74e_1
+  - libnsl=2.0.1=hd590300_0
+  - libopenblas=0.3.27=pthreads_hac2b453_1
+  - libparquet=17.0.0=haa1307c_8_cpu
+  - libpciaccess=0.18=hd590300_0
+  - libpng=1.6.43=h2797004_0
+  - libpq=16.4=h482b261_0
+  - libprotobuf=4.25.3=h08a7969_0
+  - libre2-11=2023.09.01=h5a48ba9_2
+  - librttopo=1.1.0=hc670b87_16
   - libsodium=1.0.18=h36c2ea0_1
-  - libsolv=0.7.23=h3eb15da_0
-  - libspatialindex=1.9.3=h9c3ff4c_4
-  - libspatialite=5.0.1=hb46c372_26
-  - libsqlite=3.42.0=h2797004_0
-  - libssh2=1.10.0=hf14f497_3
-  - libstdcxx-ng=12.2.0=h46fd767_19
-  - libsystemd0=253=h8c4010b_1
-  - libthrift=0.18.1=h8fd135c_1
-  - libtiff=4.5.0=ha587672_6
+  - libspatialite=5.1.0=h15fa968_9
+  - libsqlite=3.46.0=hde9e2c9_0
+  - libssh2=1.11.0=h0841786_0
+  - libstdcxx-ng=14.1.0=hc0a3c3a_0
+  - libthrift=0.20.0=hb90f79a_0
+  - libtiff=4.6.0=h46a8edc_4
+  - libtorch=2.3.1=cpu_generic_h970db74_0
   - libutf8proc=2.8.0=h166bdaf_0
   - libuuid=2.38.1=h0b41bf4_0
-  - libvorbis=1.3.7=h9c3ff4c_0
-  - libwebp-base=1.3.0=h0b41bf4_0
-  - libxcb=1.15=h0b41bf4_0
-  - libxkbcommon=1.5.0=h5d7e998_3
-  - libxml2=2.11.4=h0d562d8_0
-  - libzip=1.9.2=hc929e4a_1
-  - libzlib=1.2.13=h166bdaf_4
-  - linkify-it-py=2.0.0=pyhd8ed1ab_0
-  - llvmlite=0.40.0=py310h1b8f574_0
-  - lmfit=1.2.1=pyhd8ed1ab_0
+  - libuv=1.48.0=hd590300_0
+  - libwebp-base=1.4.0=hd590300_0
+  - libxcb=1.16=hd590300_0
+  - libxcrypt=4.4.36=hd590300_1
+  - libxkbcommon=1.7.0=h2c5496b_1
+  - libxml2=2.12.7=he7c6b58_4
+  - libxslt=1.1.39=h76b75d6_0
+  - libzip=1.10.1=h2629f0a_3
+  - libzlib=1.3.1=h4ab18f5_1
+  - linkify-it-py=2.0.3=pyhd8ed1ab_0
+  - llvmlite=0.43.0=py311hbde99c3_0
+  - lmfit=1.3.2=pyhd8ed1ab_0
   - locket=1.0.0=pyhd8ed1ab_0
   - logmuse=0.2.6=pyh8c360ce_0
-  - lz4=4.3.2=py310h0cfdcf0_0
+  - lz4=4.3.3=py311h38e4bf4_0
   - lz4-c=1.9.4=hcb278e6_0
-  - lzo=2.10=h516909a_1000
-  - mamba=1.4.2=py310h51d5547_0
-  - mapclassify=2.5.0=pyhd8ed1ab_1
-  - markdown-it-py=2.2.0=pyhd8ed1ab_0
-  - markupsafe=2.1.2=py310h1fa729e_0
-  - matplotlib=3.7.1=py310hff52083_0
-  - matplotlib-base=3.7.1=py310he60537e_0
-  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
-  - mdit-py-plugins=0.3.5=pyhd8ed1ab_0
-  - mdurl=0.1.0=pyhd8ed1ab_0
-  - mistune=2.0.5=pyhd8ed1ab_0
-  - monotonic=1.5=py_0
-  - mpg123=1.31.3=hcb278e6_0
-  - msgpack-python=1.0.5=py310hdf3cbec_0
-  - multidict=6.0.4=py310h1fa729e_0
-  - munch=3.0.0=pyhd8ed1ab_0
+  - lzo=2.10=hd590300_1001
+  - mapclassify=2.8.0=pyhd8ed1ab_0
+  - markdown-it-py=3.0.0=pyhd8ed1ab_0
+  - markupsafe=2.1.5=py311h459d7ec_0
+  - matplotlib=3.9.2=py311h38be061_0
+  - matplotlib-base=3.9.2=py311h74b4f7c_0
+  - matplotlib-inline=0.1.7=pyhd8ed1ab_0
+  - mdit-py-plugins=0.4.1=pyhd8ed1ab_0
+  - mdurl=0.1.2=pyhd8ed1ab_0
+  - minizip=4.0.7=h401b404_0
+  - mistune=3.0.2=pyhd8ed1ab_0
+  - mpc=1.3.1=hfe3b2da_0
+  - mpfr=4.2.1=h38ae2d0_2
+  - mpmath=1.3.0=pyhd8ed1ab_0
+  - msgpack-python=1.0.8=py311h52f7536_0
+  - multidict=6.0.5=py311h459d7ec_0
   - munkres=1.1.4=pyh9f0ad1d_0
-  - mypy_extensions=1.0.0=pyha770c72_0
-  - mysql-common=8.0.32=hf1915f5_2
-  - mysql-libs=8.0.32=hca2cd23_2
-  - myst-nb=0.17.2=pyhd8ed1ab_0
-  - myst-parser=0.18.1=pyhd8ed1ab_0
-  - nbclient=0.7.4=pyhd8ed1ab_0
-  - nbconvert-core=7.4.0=pyhd8ed1ab_0
-  - nbformat=5.9.0=pyhd8ed1ab_0
-  - ncurses=6.3=h27087fc_1
-  - nest-asyncio=1.5.6=pyhd8ed1ab_0
-  - networkx=3.1=pyhd8ed1ab_0
+  - mysql-common=8.3.0=h70512c7_5
+  - mysql-libs=8.3.0=ha479ceb_5
+  - myst-nb=1.1.1=pyhd8ed1ab_0
+  - myst-parser=2.0.0=pyhd8ed1ab_0
+  - nbclient=0.10.0=pyhd8ed1ab_0
+  - nbconvert-core=7.16.4=pyhd8ed1ab_1
+  - nbformat=5.10.4=pyhd8ed1ab_0
+  - ncurses=6.5=h59595ed_0
+  - nest-asyncio=1.6.0=pyhd8ed1ab_0
+  - networkx=3.3=pyhd8ed1ab_1
   - nomkl=1.0=h5ca1d4c_0
-  - notebook-shim=0.2.3=pyhd8ed1ab_0
+  - nose=1.3.7=py_1006
+  - notebook-shim=0.2.4=pyhd8ed1ab_0
   - nspr=4.35=h27087fc_0
-  - nss=3.89=he45b914_0
-  - numba=0.57.0=py310h0f6aa51_1
-  - numcodecs=0.11.0=py310heca2aa9_1
-  - numexpr=2.8.4=py310h690d005_100
-  - numpy=1.24.3=py310ha4c1d20_0
-  - oauth2client=4.1.3=py_0
+  - nss=3.103=h593d115_0
+  - numba=0.60.0=py311h4bc866e_0
+  - numcodecs=0.13.0=py311h044e617_0
+  - numexpr=2.10.0=py311h8d05612_100
   - oauthlib=3.2.2=pyhd8ed1ab_0
-  - openjpeg=2.5.0=hfec8fc6_2
-  - openssl=3.1.1=hd590300_1
-  - orc=1.8.3=hfdbbad2_0
-  - overrides=7.3.1=pyhd8ed1ab_0
-  - packaging=23.1=pyhd8ed1ab_0
-  - pandas=2.0.2=py310h7cbd5c2_0
+  - openjpeg=2.5.2=h488ebb8_0
+  - openssl=3.3.1=h4bc722e_2
+  - orc=2.0.2=h669347b_0
+  - overrides=7.7.0=pyhd8ed1ab_0
+  - packaging=24.1=pyhd8ed1ab_0
+  - pandas=2.2.2=py311h14de704_1
   - pandocfilters=1.5.0=pyhd8ed1ab_0
-  - papermill=2.3.4=pyhd8ed1ab_0
-  - paramiko=3.2.0=pyhd8ed1ab_0
-  - parso=0.8.3=pyhd8ed1ab_0
-  - partd=1.4.0=pyhd8ed1ab_0
-  - pathspec=0.11.1=pyhd8ed1ab_0
-  - patsy=0.5.3=pyhd8ed1ab_0
-  - pcre2=10.40=hc3806b6_0
-  - peppy=0.35.5=pyhd8ed1ab_0
-  - pexpect=4.8.0=pyh1a96a4e_2
+  - papermill=2.6.0=pyhd8ed1ab_0
+  - parso=0.8.4=pyhd8ed1ab_0
+  - partd=1.4.2=pyhd8ed1ab_0
+  - patsy=0.5.6=pyhd8ed1ab_0
+  - pcre2=10.44=hba22ea6_2
+  - peppy=0.40.5=pyhd8ed1ab_0
+  - pexpect=4.9.0=pyhd8ed1ab_0
   - pickleshare=0.7.5=py_1003
-  - pillow=9.5.0=py310h582fbeb_1
-  - pip=23.1.2=pyhd8ed1ab_0
-  - pixman=0.40.0=h36c2ea0_0
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
-  - plac=1.3.5=pyhd8ed1ab_0
-  - platformdirs=3.5.1=pyhd8ed1ab_0
-  - plotly=5.14.1=pyhd8ed1ab_0
-  - pluggy=1.0.0=pyhd8ed1ab_5
-  - ply=3.11=py_1
-  - pomegranate=0.14.8=py310hc4a4660_0
-  - pooch=1.7.0=pyha770c72_3
-  - poppler=23.05.0=hd18248d_1
+  - pillow=10.4.0=py311h82a398c_0
+  - pip=24.2=pyhd8ed1ab_0
+  - pixman=0.43.2=h59595ed_0
+  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
+  - plac=1.4.3=pyhd8ed1ab_0
+  - platformdirs=4.2.2=pyhd8ed1ab_0
+  - plotly=5.23.0=pyhd8ed1ab_0
+  - pluggy=1.5.0=pyhd8ed1ab_0
+  - pomegranate=1.0.0=pyhd8ed1ab_1
+  - poppler=24.08.0=hb0d391f_0
   - poppler-data=0.4.12=hd8ed1ab_0
-  - postgresql=15.3=hd458b1d_1
-  - prettytable=3.7.0=pyhd8ed1ab_0
-  - proj=9.2.0=h8ffa02c_0
-  - prometheus_client=0.17.0=pyhd8ed1ab_0
-  - prompt-toolkit=3.0.38=pyha770c72_0
-  - prompt_toolkit=3.0.38=hd8ed1ab_0
-  - protobuf=4.21.12=py310heca2aa9_0
-  - psutil=5.9.5=py310h1fa729e_0
+  - postgresql=16.4=ha8faf9a_0
+  - proj=9.4.1=h54d7996_1
+  - prometheus_client=0.20.0=pyhd8ed1ab_0
+  - prompt-toolkit=3.0.47=pyha770c72_0
+  - proto-plus=1.23.0=pyhd8ed1ab_0
+  - protobuf=4.25.3=py311h7b78aeb_0
+  - psutil=6.0.0=py311h331c9d8_0
   - pthread-stubs=0.4=h36c2ea0_1001
   - ptyprocess=0.7.0=pyhd3deb0d_0
-  - pulp=2.7.0=py310hff52083_0
-  - pulseaudio-client=16.1=hb77b528_4
-  - pure_eval=0.2.2=pyhd8ed1ab_0
-  - pyarrow=12.0.0=py310he6bfd7f_5_cpu
-  - pyasn1=0.4.8=py_0
-  - pyasn1-modules=0.2.7=py_0
-  - pybind11-abi=4=hd8ed1ab_3
+  - pulp=2.8.0=py311h38be061_0
+  - pure_eval=0.2.3=pyhd8ed1ab_0
+  - pyarrow=17.0.0=py311hbd00459_1
+  - pyarrow-core=17.0.0=py311h4510849_1_cpu
+  - pyarrow-hotfix=0.6=pyhd8ed1ab_0
+  - pyasn1=0.6.0=pyhd8ed1ab_0
+  - pyasn1-modules=0.4.0=pyhd8ed1ab_0
   - pybtex=0.24.0=pyhd8ed1ab_2
-  - pybtex-docutils=1.0.2=py310hff52083_2
-  - pycosat=0.6.4=py310h5764c6d_1
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pydata-sphinx-theme=0.13.3=pyhd8ed1ab_0
-  - pygments=2.15.1=pyhd8ed1ab_0
-  - pyjwt=2.7.0=pyhd8ed1ab_0
-  - pynacl=1.5.0=py310h5764c6d_2
-  - pyopenssl=23.2.0=pyhd8ed1ab_1
-  - pyparsing=3.0.9=pyhd8ed1ab_0
-  - pyproj=3.5.0=py310hb814896_1
+  - pybtex-docutils=1.0.3=py311h38be061_1
+  - pycparser=2.22=pyhd8ed1ab_0
+  - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
+  - pygments=2.18.0=pyhd8ed1ab_0
+  - pyjwt=2.9.0=pyhd8ed1ab_1
+  - pyogrio=0.9.0=py311hfc743a8_0
+  - pyopenssl=24.2.1=pyhd8ed1ab_2
+  - pyparsing=3.1.2=pyhd8ed1ab_0
+  - pyproj=3.6.1=py311ha1c4eca_8
   - pyprojroot=0.3.0=pyhd8ed1ab_0
-  - pyqt=5.15.7=py310hab646b1_3
-  - pyqt5-sip=12.11.0=py310heca2aa9_3
-  - pyrsistent=0.19.3=py310h1fa729e_0
-  - pysftp=0.2.9=py_1
+  - pyside6=6.7.2=py311hba19f1e_2
   - pysocks=1.7.1=pyha2e5f31_6
-  - pytest=7.3.1=pyhd8ed1ab_0
-  - python=3.10.11=he550d4f_0_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python-fastjsonschema=2.17.1=pyhd8ed1ab_0
-  - python-irodsclient=1.1.8=pyhd8ed1ab_0
+  - pytest=8.3.2=pyhd8ed1ab_0
+  - python=3.11.9=hb806964_0_cpython
+  - python-dateutil=2.9.0=pyhd8ed1ab_0
+  - python-fastjsonschema=2.20.0=pyhd8ed1ab_0
   - python-json-logger=2.0.7=pyhd8ed1ab_0
-  - python-tzdata=2023.3=pyhd8ed1ab_0
-  - python_abi=3.10=3_cp310
-  - pytz=2023.3=pyhd8ed1ab_0
+  - python-tzdata=2024.1=pyhd8ed1ab_0
+  - python_abi=3.11=5_cp311
+  - pytorch=2.3.1=cpu_generic_py311h8ca351a_0
+  - pytz=2024.1=pyhd8ed1ab_0
   - pyu2f=0.1.5=pyhd8ed1ab_0
-  - pyyaml=6.0=py310h5764c6d_5
-  - pyzmq=25.1.0=py310h5bbb5d0_0
-  - qt-main=5.15.8=h01ceb2d_13
-  - rdma-core=28.9=h59595ed_1
-  - re2=2023.03.02=h8c504da_0
+  - pyyaml=6.0.2=py311h61187de_0
+  - pyzmq=26.1.1=py311h759c1eb_0
+  - qhull=2020.2=h434a139_5
+  - qt6-main=6.7.2=hb12f9c5_4
+  - re2=2023.09.01=h7f4b329_2
   - readline=8.2=h8228510_1
-  - reproc=14.2.4=h0b41bf4_0
-  - reproc-cpp=14.2.4=hcb278e6_0
-  - requests=2.31.0=pyhd8ed1ab_0
-  - requests-oauthlib=1.3.1=pyhd8ed1ab_0
+  - referencing=0.35.1=pyhd8ed1ab_0
+  - requests=2.32.3=pyhd8ed1ab_0
+  - requests-oauthlib=2.0.0=pyhd8ed1ab_0
   - reretry=0.11.8=pyhd8ed1ab_0
-  - retry_decorator=1.1.1=pyh9f0ad1d_0
   - rfc3339-validator=0.1.4=pyhd8ed1ab_0
   - rfc3986-validator=0.1.1=pyh9f0ad1d_0
-  - rich=13.4.1=pyhd8ed1ab_0
+  - rich=13.7.1=pyhd8ed1ab_0
+  - rpds-py=0.20.0=py311hb3a8bbb_0
   - rsa=4.9=pyhd8ed1ab_0
-  - rtree=1.0.1=py310hbdcdc62_1
-  - ruamel.yaml=0.17.31=py310h2372a71_0
-  - ruamel.yaml.clib=0.2.7=py310h1fa729e_1
-  - s2n=1.3.44=h06160fa_0
-  - s3transfer=0.6.1=pyhd8ed1ab_0
-  - scikit-allel=1.3.5=py310hb5077e9_1
-  - scikit-learn=1.2.2=py310hf7d194e_2
-  - scipy=1.10.1=py310ha4c1d20_3
-  - seaborn=0.12.2=hd8ed1ab_0
-  - seaborn-base=0.12.2=pyhd8ed1ab_0
-  - send2trash=1.8.2=pyh41d4057_0
-  - setuptools=67.7.2=pyhd8ed1ab_0
-  - setuptools-scm=7.1.0=pyhd8ed1ab_0
-  - shapely=2.0.1=py310h056c13c_1
-  - sip=6.7.9=py310hc6cd4ac_0
+  - s2n=1.5.1=h3400bea_0
+  - scikit-allel=1.3.8=py311h14de704_2
+  - scikit-learn=1.5.1=py311hd632256_0
+  - scipy=1.14.0=py311h0a5b728_2
+  - seaborn=0.13.2=hd8ed1ab_2
+  - seaborn-base=0.13.2=pyhd8ed1ab_2
+  - send2trash=1.8.3=pyh0d859eb_0
+  - setuptools=72.2.0=pyhd8ed1ab_0
+  - setuptools-scm=8.1.0=pyhd8ed1ab_0
+  - shapely=2.0.6=py311h5925939_0
   - six=1.16.0=pyh6c4a22f_0
-  - slacker=0.14.0=py_0
-  - smart_open=6.3.0=pyhd8ed1ab_1
-  - smmap=3.0.5=pyh44b312d_0
-  - snakemake=7.26.0=hdfd78af_0
-  - snakemake-minimal=7.26.0=pyhdfd78af_0
-  - snappy=1.1.10=h9fff704_0
-  - sniffio=1.3.0=pyhd8ed1ab_0
+  - slack-sdk=3.31.0=pyha770c72_0
+  - slack_sdk=3.31.0=hd8ed1ab_0
+  - sleef=3.6.1=h3400bea_1
+  - smart_open=7.0.4=pyhd8ed1ab_0
+  - smmap=5.0.0=pyhd8ed1ab_0
+  - snakemake=8.18.2=hdfd78af_0
+  - snakemake-interface-common=1.17.3=pyhdfd78af_0
+  - snakemake-interface-executor-plugins=9.2.0=pyhdfd78af_0
+  - snakemake-interface-report-plugins=1.0.0=pyhdfd78af_0
+  - snakemake-interface-storage-plugins=3.3.0=pyhdfd78af_0
+  - snakemake-minimal=8.18.2=pyhdfd78af_0
+  - snappy=1.2.1=ha2e4443_0
+  - sniffio=1.3.1=pyhd8ed1ab_0
   - snowballstemmer=2.2.0=pyhd8ed1ab_0
-  - socksipy-branch=1.01=pyh9f0ad1d_0
   - sortedcontainers=2.4.0=pyhd8ed1ab_0
-  - soupsieve=2.3.2.post1=pyhd8ed1ab_0
-  - sphinx=4.5.0=pyh6c4a22f_0
-  - sphinx-book-theme=1.0.1=pyhd8ed1ab_0
+  - soupsieve=2.5=pyhd8ed1ab_1
+  - spdlog=1.14.1=hed91bc2_1
+  - sphinx=7.4.7=pyhd8ed1ab_0
+  - sphinx-book-theme=1.1.3=pyhd8ed1ab_0
   - sphinx-comments=0.0.3=pyh9f0ad1d_0
   - sphinx-copybutton=0.5.2=pyhd8ed1ab_0
-  - sphinx-design=0.3.0=pyhd8ed1ab_0
-  - sphinx-external-toc=0.3.1=pyhd8ed1ab_0
-  - sphinx-jupyterbook-latex=0.5.2=pyhd8ed1ab_0
+  - sphinx-design=0.6.1=pyhd8ed1ab_0
+  - sphinx-external-toc=1.0.1=pyhd8ed1ab_0
+  - sphinx-jupyterbook-latex=1.0.0=pyhd8ed1ab_0
   - sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
-  - sphinx-thebe=0.2.1=pyhd8ed1ab_0
+  - sphinx-thebe=0.3.1=pyhd8ed1ab_0
   - sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
-  - sphinxcontrib-applehelp=1.0.4=pyhd8ed1ab_0
-  - sphinxcontrib-bibtex=2.5.0=pyhd8ed1ab_0
-  - sphinxcontrib-devhelp=1.0.2=py_0
-  - sphinxcontrib-htmlhelp=2.0.1=pyhd8ed1ab_0
-  - sphinxcontrib-jsmath=1.0.1=py_0
-  - sphinxcontrib-qthelp=1.0.3=py_0
-  - sphinxcontrib-serializinghtml=1.1.5=pyhd8ed1ab_2
-  - sqlalchemy=2.0.15=py310h2372a71_0
-  - sqlite=3.42.0=h2c6b66d_0
+  - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0
+  - sphinxcontrib-bibtex=2.6.2=pyhd8ed1ab_0
+  - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0
+  - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0
+  - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
+  - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0
+  - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
+  - sqlalchemy=2.0.32=py311h61187de_0
+  - sqlite=3.46.0=h6d4b2fc_0
   - stack_data=0.6.2=pyhd8ed1ab_0
-  - statsmodels=0.14.0=py310h278f3c1_1
-  - stone=3.3.1=pyhd8ed1ab_0
+  - statsmodels=0.14.2=py311h18e1886_0
   - stopit=1.1.2=py_0
+  - sympy=1.13.2=pypyh2585a3b_103
   - tabulate=0.9.0=pyhd8ed1ab_1
-  - tblib=1.7.0=pyhd8ed1ab_0
-  - tenacity=8.2.2=pyhd8ed1ab_0
-  - terminado=0.17.1=pyh41d4057_0
-  - textwrap3=0.9.2=py_0
-  - threadpoolctl=3.1.0=pyh8a188c0_0
-  - throttler=1.2.1=pyhd8ed1ab_0
-  - tiledb=2.13.2=hd532e3d_0
-  - tinycss2=1.2.1=pyhd8ed1ab_0
-  - tk=8.6.12=h27826a3_0
-  - toml=0.10.2=pyhd8ed1ab_0
+  - tblib=3.0.0=pyhd8ed1ab_0
+  - tenacity=9.0.0=pyhd8ed1ab_0
+  - terminado=0.18.1=pyh0d859eb_0
+  - threadpoolctl=3.5.0=pyhc1e730c_0
+  - throttler=1.2.2=pyhd8ed1ab_0
+  - tiledb=2.25.0=h213c483_7
+  - tinycss2=1.3.0=pyhd8ed1ab_0
+  - tk=8.6.13=noxft_h4845f30_101
   - tomli=2.0.1=pyhd8ed1ab_0
-  - toolz=0.12.0=pyhd8ed1ab_0
+  - toolz=0.12.1=pyhd8ed1ab_0
   - toposort=1.10=pyhd8ed1ab_0
-  - tornado=6.3.2=py310h2372a71_0
-  - tqdm=4.65.0=pyhd8ed1ab_1
-  - traitlets=5.9.0=pyhd8ed1ab_0
+  - tornado=6.4.1=py311h331c9d8_0
+  - tqdm=4.66.5=pyhd8ed1ab_0
+  - traitlets=5.14.3=pyhd8ed1ab_0
   - traittypes=0.2.1=pyh9f0ad1d_2
-  - typing-extensions=4.6.2=hd8ed1ab_0
-  - typing_extensions=4.6.2=pyha770c72_0
+  - types-python-dateutil=2.9.0.20240821=pyhd8ed1ab_0
+  - typing-extensions=4.12.2=hd8ed1ab_0
+  - typing_extensions=4.12.2=pyha770c72_0
   - typing_utils=0.1.0=pyhd8ed1ab_0
-  - tzcode=2023c=h0b41bf4_0
-  - tzdata=2023c=h71feb2d_0
-  - ubiquerg=0.6.2=pyhd8ed1ab_0
-  - uc-micro-py=1.0.1=pyhd8ed1ab_0
-  - ucx=1.14.1=hf587318_2
-  - uncertainties=3.1.7=pyhd8ed1ab_0
-  - unicodedata2=15.0.0=py310h5764c6d_0
-  - uritemplate=4.1.1=pyhd8ed1ab_0
-  - urllib3=1.26.15=pyhd8ed1ab_0
+  - tzcode=2024a=h3f72095_0
+  - tzdata=2024a=h0c530f3_0
+  - ubiquerg=0.8.0=pyhd8ed1ab_0
+  - uc-micro-py=1.0.3=pyhd8ed1ab_0
+  - uncertainties=3.2.2=pyhd8ed1ab_1
+  - uri-template=1.3.0=pyhd8ed1ab_0
+  - uriparser=0.9.8=hac33072_0
+  - urllib3=2.2.2=pyhd8ed1ab_1
   - veracitools=0.1.3=py_0
-  - wcwidth=0.2.6=pyhd8ed1ab_0
-  - webencodings=0.5.1=py_1
-  - websocket-client=1.5.2=pyhd8ed1ab_0
-  - wheel=0.40.0=pyhd8ed1ab_0
-  - widgetsnbextension=4.0.7=pyhd8ed1ab_0
-  - wrapt=1.15.0=py310h1fa729e_0
-  - xarray=2023.5.0=pyhd8ed1ab_0
-  - xcb-util=0.4.0=hd590300_1
-  - xcb-util-image=0.4.0=h8ee46fc_1
-  - xcb-util-keysyms=0.4.0=h8ee46fc_1
-  - xcb-util-renderutil=0.3.9=hd590300_1
-  - xcb-util-wm=0.4.1=h8ee46fc_1
-  - xerces-c=3.2.4=h8d71039_2
-  - xkeyboard-config=2.38=h0b41bf4_0
+  - wayland=1.23.0=h5291e77_0
+  - wcwidth=0.2.13=pyhd8ed1ab_0
+  - webcolors=24.8.0=pyhd8ed1ab_0
+  - webencodings=0.5.1=pyhd8ed1ab_2
+  - websocket-client=1.8.0=pyhd8ed1ab_0
+  - wheel=0.44.0=pyhd8ed1ab_0
+  - widgetsnbextension=4.0.11=pyhd8ed1ab_0
+  - wrapt=1.16.0=py311h459d7ec_0
+  - xarray=2024.7.0=pyhd8ed1ab_0
+  - xcb-util=0.4.1=hb711507_2
+  - xcb-util-cursor=0.1.4=h4ab18f5_2
+  - xcb-util-image=0.4.0=hb711507_2
+  - xcb-util-keysyms=0.4.1=hb711507_0
+  - xcb-util-renderutil=0.3.10=hb711507_0
+  - xcb-util-wm=0.4.2=hb711507_0
+  - xerces-c=3.2.5=h666cd97_1
+  - xkeyboard-config=2.42=h4ab18f5_0
   - xorg-kbproto=1.0.7=h7f98852_1002
   - xorg-libice=1.1.1=hd590300_0
   - xorg-libsm=1.2.4=h7391055_0
-  - xorg-libx11=1.8.4=h8ee46fc_1
+  - xorg-libx11=1.8.9=hb711507_1
   - xorg-libxau=1.0.11=hd590300_0
   - xorg-libxdmcp=1.1.3=h7f98852_0
   - xorg-libxext=1.3.4=h0b41bf4_2
-  - xorg-libxrender=0.9.10=h7f98852_1003
+  - xorg-libxrender=0.9.11=hd590300_0
   - xorg-renderproto=0.11.1=h7f98852_1002
   - xorg-xextproto=7.3.0=h0b41bf4_1003
-  - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
   - xorg-xproto=7.0.31=h7f98852_1007
-  - xyzservices=2023.5.0=pyhd8ed1ab_1
+  - xyzservices=2024.6.0=pyhd8ed1ab_0
   - xz=5.2.6=h166bdaf_0
   - yaml=0.2.5=h7f98852_2
-  - yaml-cpp=0.7.0=h27087fc_2
-  - yarl=1.9.2=py310h2372a71_0
-  - yte=1.5.1=pyha770c72_2
-  - zarr=2.14.2=pyhd8ed1ab_0
-  - zeromq=4.3.4=h9c3ff4c_1
+  - yarl=1.9.4=py311h459d7ec_0
+  - yte=1.5.4=pyha770c72_0
+  - zarr=2.18.2=pyhd8ed1ab_0
+  - zeromq=4.3.5=h75354e8_4
   - zict=3.0.0=pyhd8ed1ab_0
-  - zipp=3.15.0=pyhd8ed1ab_0
-  - zlib=1.2.13=h166bdaf_4
-  - zstandard=0.19.0=py310hdeb6495_1
-  - zstd=1.5.2=h3eb15da_6
+  - zipp=3.20.0=pyhd8ed1ab_0
+  - zlib=1.3.1=h4ab18f5_1
+  - zstandard=0.23.0=py311h5cd10c7_0
+  - zstd=1.5.6=ha6fb4c9_0
   - pip:
-      - ansi2html==1.8.0
-      - dash==2.10.2
+      - biotite==0.41.2
+      - dash==2.17.1
       - dash-core-components==2.0.0
-      - dash-cytoscape==0.3.0
+      - dash-cytoscape==1.0.2
       - dash-html-components==2.0.0
       - dash-table==5.0.0
-      - flask==2.2.5
+      - flask==3.0.3
       - igv-notebook==0.5.2
-      - importlib-metadata==4.13.0
-      - ipinfo==4.4.2
-      - itsdangerous==2.1.2
-      - jupyter-dash==0.4.2
-      - malariagen-data==7.10.0
-      - numpydoc-decorator==2.1.0
-      - orjson==3.9.0
-      - protopunica==0.14.8
+      - ipinfo==5.0.1
+      - itsdangerous==2.2.0
+      - malariagen-data==12.0.0
+      - numpy==1.26.4
+      - numpydoc-decorator==2.2.0
+      - orjson==3.10.7
+      - protopunica==0.14.8.post1
       - retrying==1.3.4
-      - typeguard==4.0.0
-      - werkzeug==2.2.3
-prefix: /home/aliman/mambaforge/envs/selection-atlas
+      - termcolor==2.3.0
+      - typeguard==4.3.0
+      - werkzeug==3.0.3
+      - yaspin==3.0.2
+prefix: /opt/conda/envs/selection-atlas
diff --git a/requirements.yml b/requirements.yml
index c069277..7cd48ed 100644
--- a/requirements.yml
+++ b/requirements.yml
@@ -3,7 +3,7 @@ channels:
     - conda-forge
     - bioconda
 dependencies:
-    - python=3.10
+    - python=3.11
     - numpy
     - snakemake
     - papermill
@@ -15,11 +15,11 @@ dependencies:
     - fsspec
     - gcsfs
     - jupyterlab
-    - jupyter-book==0.15.1
+    - jupyter-book
     - BioPython
-    - gsutil
+    - google-cloud-sdk
     - scikit-allel
-    - bokeh>=3.1
+    - bokeh
     - statsmodels
     - ipyleaflet
     - tqdm
@@ -34,4 +34,4 @@ dependencies:
     - pip
     - pip:
           - jsonschema>=3.1.0
-          - malariagen_data>=7.10.0
+          - malariagen_data
diff --git a/workflow/Snakefile b/workflow/Snakefile-analysis
similarity index 69%
rename from workflow/Snakefile
rename to workflow/Snakefile-analysis
index 2bca9fc..be26cf7 100644
--- a/workflow/Snakefile
+++ b/workflow/Snakefile-analysis
@@ -10,12 +10,9 @@ chromosomes = config['contigs']
 # include rule files
 include: "rules/common.smk"
 include: "rules/cohorts.smk"
-include: "rules/site.smk"
 include: "rules/gwss.smk"
 include: "rules/utility.smk"
 
 rule all:
     input:
-        analyses = get_selection_atlas_outputs,
-        site = get_selection_atlas_site_pages,
-        build = "docs/_build/"
+        analyses = get_selection_atlas_outputs
\ No newline at end of file
diff --git a/workflow/Snakefile-site-build b/workflow/Snakefile-site-build
new file mode 100644
index 0000000..5010cc3
--- /dev/null
+++ b/workflow/Snakefile-site-build
@@ -0,0 +1,41 @@
+import pandas as pd
+import geopandas as gpd
+import yaml
+
+# open configuration file
+configfile: "workflow/config.yaml"
+configpath = workflow.configfiles[0]
+chromosomes = config['contigs']
+
+# we dont use checkpoints in the site workflow, so need separate functions to the other workflow
+def get_selection_atlas_site_pages(wildcards):
+    df = gpd.read_file("build/final_cohorts.geojson")
+
+    wanted_outputs = []
+    wanted_outputs.extend(["docs/home-page.ipynb"])
+    wanted_outputs.extend(
+                expand("docs/country/{country}.ipynb", country=df['country_alpha2'])
+        )
+
+    wanted_outputs.extend(
+                expand("docs/genome/ag-{chrom}.ipynb", chrom=chromosomes)
+        )
+    
+    wanted_outputs.extend(
+                expand("docs/cohort/{cohort}.ipynb", cohort=df['cohort_id'].unique())
+    )
+    return wanted_outputs 
+
+def get_h12_signal_detection_csvs(wildcards):
+    df = pd.read_csv("build/final_cohorts.csv")
+    paths = expand("build/h12-signal-detection/{cohort}_{contig}.csv", cohort=df['cohort_id'], contig=chromosomes)
+    return paths
+
+# include rule files
+include: "rules/site.smk"
+include: "rules/utility.smk"
+
+rule all:
+    input:
+        site = get_selection_atlas_site_pages,
+        build = "docs/_build/"
diff --git a/workflow/config.yaml b/workflow/config.yaml
index 2bbfdb9..c0e3ca8 100644
--- a/workflow/config.yaml
+++ b/workflow/config.yaml
@@ -19,7 +19,7 @@ contigs:
 
 # Pin the cohorts analysis version in order to get reproducible
 # builds.
-cohorts_analysis: "20230223"
+cohorts_analysis: "20240717"
 
 # Select the contig to use for H12 window size calibration.
 h12_calibration_contig: "3L"
diff --git a/workflow/notebooks/h12-signal-detection.ipynb b/workflow/notebooks/h12-signal-detection.ipynb
index b67f755..23cdefd 100644
--- a/workflow/notebooks/h12-signal-detection.ipynb
+++ b/workflow/notebooks/h12-signal-detection.ipynb
@@ -239,7 +239,7 @@
    "outputs": [],
    "source": [
     "# load gwss data\n",
-    "ppos, h12 = ag3.h12_gwss(\n",
+    "ppos, h12, _ = ag3.h12_gwss(\n",
     "    contig=contig, \n",
     "    window_size=window_size, \n",
     "    analysis=phasing_analysis, \n",
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
index 124d58d..d8ed4a3 100644
--- a/workflow/rules/common.smk
+++ b/workflow/rules/common.smk
@@ -55,26 +55,6 @@ def get_selection_atlas_outputs(wildcards):
     return wanted_outputs
 
 
-def get_selection_atlas_site_pages(wildcards):
-
-    df = gpd.read_file(checkpoints.geolocate_cohorts.get().output.cohorts_geojson)
-
-    wanted_outputs = []
-    wanted_outputs.extend(["docs/home-page.ipynb"])
-    wanted_outputs.extend(
-                expand("docs/country/{country}.ipynb", country=df['country_alpha2'])
-        )
-
-    wanted_outputs.extend(
-                expand("docs/genome/ag-{chrom}.ipynb", chrom=chromosomes)
-        )
-    
-    wanted_outputs.extend(
-                expand("docs/cohort/{cohort}.ipynb", cohort=df['cohort_id'].unique())
-    )
-    return wanted_outputs 
-
-
 def get_cohort_page_notebooks(wildcards):
     df = gpd.read_file(checkpoints.geolocate_cohorts.get().output.cohorts_geojson)
     
diff --git a/workflow/rules/site.smk b/workflow/rules/site.smk
index 29379ad..45dfc91 100644
--- a/workflow/rules/site.smk
+++ b/workflow/rules/site.smk
@@ -19,7 +19,7 @@ rule build_site:
 rule generate_toc:
     input:
         nb = f"{workflow.basedir}/notebooks/generate-toc.ipynb",
-        cohorts_geojson = rules.geolocate_cohorts.output.cohorts_geojson,
+        cohorts_geojson = "build/final_cohorts.geojson",
         config = configpath,
     output:
         nb = "build/notebooks/generate-toc.ipynb",
@@ -37,7 +37,7 @@ rule home_page:
     input:
         nb = f"{workflow.basedir}/notebooks/home-page.ipynb",
         config = configpath,
-        cohorts_geojson = rules.geolocate_cohorts.output.cohorts_geojson,
+        cohorts_geojson = "build/final_cohorts.geojson",
     output:
         nb = "docs/home-page.ipynb"
     log:
@@ -53,7 +53,7 @@ rule country_pages:
     input:
         nb = f"{workflow.basedir}/notebooks/country-page.ipynb",
         config = configpath,
-        cohorts_geojson = rules.geolocate_cohorts.output.cohorts_geojson,
+        cohorts_geojson = "build/final_cohorts.geojson",
     output:
         nb = "build/notebooks/country/{country}.ipynb"
     log:
@@ -69,7 +69,7 @@ rule chromosome_pages:
     input:
         nb = f"{workflow.basedir}/notebooks/chromosome-page.ipynb",
         config = configpath,
-        cohorts_geojson = rules.geolocate_cohorts.output.cohorts_geojson,
+        cohorts_geojson = "build/final_cohorts.geojson",
         signals = get_h12_signal_detection_csvs,
     output:
         nb = "build/notebooks/genome/ag-{chrom}.ipynb"
@@ -85,7 +85,7 @@ rule chromosome_pages:
 rule cohort_pages:
     input:
         nb = f"{workflow.basedir}/notebooks/cohort-page.ipynb",
-        cohorts_geojson = rules.geolocate_cohorts.output.cohorts_geojson,
+        cohorts_geojson = "build/final_cohorts.geojson",
         output_h12="build/notebooks/h12-gwss-{cohort}.ipynb",
         output_g123="build/notebooks/g123-gwss-{cohort}.ipynb",
         output_ihs="build/notebooks/ihs-gwss-{cohort}.ipynb",