diff --git a/docs/alert/vgsc.ipynb b/docs/alert/SA-1-Vgsc.ipynb
similarity index 99%
rename from docs/alert/vgsc.ipynb
rename to docs/alert/SA-1-Vgsc.ipynb
index b09135f..fb7f531 100644
--- a/docs/alert/vgsc.ipynb
+++ b/docs/alert/SA-1-Vgsc.ipynb
@@ -62,22 +62,7 @@
    "id": "1f2288aa-fe3d-44c2-88be-aa897d9b4b49",
    "metadata": {},
    "source": [
-    "# *Vgsc*\n",
-    "\n",
-    "AGAP004707 (*Vgsc*)\n",
-    "\n",
-    "Mutations in this gene cause resistance to pyrethroid insecticides and DDT. The most common of these mutations is L995F, which is found across many insect taxa. In *Anopheles gambiae s.l*, we observe many distinct variants under selection, for example, L995F, L995S, and a haplotype containing both V402L and I1527T [(Clarkson *et al.,* 2021)](https://doi.org/10.1111/mec.15845). \n",
-    "\n",
-    "This form of resistance was first reported in *Anopheles gambiae* in 1998 [(Martinez-Torres *et al.,* 1998)](https://pubmed.ncbi.nlm.nih.gov/9535162/). Mutants at this locus are now found throughout sub-Saharan Africa. "
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "97da6cd4-0dc2-4ba4-8cac-4f93edc4badc",
-   "metadata": {},
-   "source": [
-    "## Cohorts affected\n",
-    "Overlapping signals of selection are found in the following cohorts. "
+    "# SA-1 (*Vgsc*)"
    ]
   },
   {
@@ -117,30 +102,6 @@
     "region_signals = region_signals.merge(cohorts)"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "9222a438-686f-410f-8fd9-02428c2d3095",
-   "metadata": {
-    "tags": [
-     "remove-input"
-    ]
-   },
-   "outputs": [],
-   "source": [
-    "cohort_links = ['<a href=\"../cohort/' + row['cohort_id'] + '.html\">' + row[\"cohort_label\"] + \"</a>\" for i, row in region_signals.iterrows()]\n",
-    "html_message = '<li>' + '</li><li>'.join(cohort_links) + '</li>'\n",
-    "HTML(html_message)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "b29f7a5a-c33d-4f5a-b6d3-9023ab7ebe55",
-   "metadata": {},
-   "source": [
-    "## Signals and candidate genes"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -315,6 +276,45 @@
     "plot_region_summary(df=region_signals.reset_index(), region_name=region_name)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "97da6cd4-0dc2-4ba4-8cac-4f93edc4badc",
+   "metadata": {},
+   "source": [
+    "## Cohorts affected\n",
+    "Overlapping signals of selection are found in the following cohorts. "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9222a438-686f-410f-8fd9-02428c2d3095",
+   "metadata": {
+    "tags": [
+     "remove-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "cohort_links = ['<a href=\"../cohort/' + row['cohort_id'] + '.html\">' + row[\"cohort_label\"] + \"</a>\" for i, row in region_signals.iterrows()]\n",
+    "html_message = '<li>' + '</li><li>'.join(cohort_links) + '</li>'\n",
+    "HTML(html_message)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "b29f7a5a-c33d-4f5a-b6d3-9023ab7ebe55",
+   "metadata": {},
+   "source": [
+    "## Candidate genes\n",
+    "\n",
+    "AGAP004707 (*Vgsc*)\n",
+    "\n",
+    "Mutations in this gene cause resistance to pyrethroid insecticides and DDT. The most common of these mutations is L995F, which is found across many insect taxa. In *Anopheles gambiae s.l*, we observe many distinct variants under selection, for example, L995F, L995S, and a haplotype containing both V402L and I1527T [(Clarkson *et al.,* 2021)](https://doi.org/10.1111/mec.15845). \n",
+    "\n",
+    "This form of resistance was first reported in *Anopheles gambiae* in 1998 [(Martinez-Torres *et al.,* 1998)](https://pubmed.ncbi.nlm.nih.gov/9535162/). Mutants at this locus are now found throughout sub-Saharan Africa. "
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "fbf2eacc-ee18-425e-a3ee-ad8e53bda5f9",
diff --git a/docs/alert/coeaexf.ipynb b/docs/alert/SA-2-Coeaexf.ipynb
similarity index 98%
rename from docs/alert/coeaexf.ipynb
rename to docs/alert/SA-2-Coeaexf.ipynb
index e7562dc..d738c47 100644
--- a/docs/alert/coeaexf.ipynb
+++ b/docs/alert/SA-2-Coeaexf.ipynb
@@ -31,21 +31,18 @@
    },
    "outputs": [],
    "source": [
-    "from IPython.display import Markdown, HTML\n",
+    "from IPython.display import HTML\n",
     "import malariagen_data\n",
     "import numpy as np\n",
     "import pandas as pd\n",
     "from pyprojroot import here\n",
-    "import yaml\n",
     "import dask\n",
     "dask.config.set(scheduler=dask_scheduler);\n",
-    "from textwrap import dedent\n",
     "\n",
     "import geopandas as gpd\n",
     "import bokeh.layouts as bklay\n",
     "import bokeh.plotting as bkplt\n",
     "import bokeh.models as bkmod\n",
-    "import plotly.express as px\n",
     "\n",
     "from bokeh.io import output_notebook # enables plot interface in J notebook\n",
     "\n",
@@ -62,23 +59,15 @@
    "id": "1f2288aa-fe3d-44c2-88be-aa897d9b4b49",
    "metadata": {},
    "source": [
-    "# *Coeaexf*\n",
-    "\n",
-    "AGAP006227 (*Coeae1f*)  \n",
-    "AGAP006228 (*Coeae2f*)\n",
-    "\n",
-    "Gene amplifications covering these alpha-esterases have been recently associated with resistance to the organophosphate, pirimiphos-methyl [(Nagi *et al.,* 2024)](https://www.biorxiv.org/content/10.1101/2024.02.01.578361v1). Pirimiphos-methyl is widely used in indoor-residual spraying campaigns as the formulation Actellic CS300. \n",
-    "\n",
-    "The genes are orthologous to the Est2 and Est3 genes of *Culex pipiens*, which also confer resistance to organophosphates, and were studied intensely in the late 20th century as an example of evolution due to anthropogenic pressures [(Raymond *et al.,* 1998)](https://doi.org/10.1098/rstb.1998.0322). "
+    "# SA-2 (*Coeaexf*)"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "97da6cd4-0dc2-4ba4-8cac-4f93edc4badc",
+   "id": "b29f7a5a-c33d-4f5a-b6d3-9023ab7ebe55",
    "metadata": {},
    "source": [
-    "## Cohorts affected\n",
-    "Overlapping signals of selection are found in the following cohorts. "
+    "## Signals"
    ]
   },
   {
@@ -118,30 +107,6 @@
     "region_signals = region_signals.merge(cohorts)"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "5b39047f-6b12-4402-a973-7dc1cd4f39b1",
-   "metadata": {
-    "tags": [
-     "remove-input"
-    ]
-   },
-   "outputs": [],
-   "source": [
-    "cohort_links = ['<a href=\"../cohort/' + row['cohort_id'] + '.html\">' + row[\"cohort_label\"] + \"</a>\" for i, row in region_signals.iterrows()]\n",
-    "html_message = '<li>' + '</li><li>'.join(cohort_links) + '</li>'\n",
-    "HTML(html_message)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "b29f7a5a-c33d-4f5a-b6d3-9023ab7ebe55",
-   "metadata": {},
-   "source": [
-    "## Signals and candidate genes"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -316,6 +281,46 @@
     "plot_region_summary(df=region_signals.reset_index(), region_name=region_name)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "97da6cd4-0dc2-4ba4-8cac-4f93edc4badc",
+   "metadata": {},
+   "source": [
+    "## Cohorts affected\n",
+    "Overlapping signals of selection are found in the following cohorts. "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "5b39047f-6b12-4402-a973-7dc1cd4f39b1",
+   "metadata": {
+    "tags": [
+     "remove-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "cohort_links = ['<a href=\"../cohort/' + row['cohort_id'] + '.html\">' + row[\"cohort_label\"] + \"</a>\" for i, row in region_signals.iterrows()]\n",
+    "html_message = '<li>' + '</li><li>'.join(cohort_links) + '</li>'\n",
+    "HTML(html_message)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "b29c3508",
+   "metadata": {},
+   "source": [
+    "## Candidate genes \n",
+    "\n",
+    "AGAP006227 (*Coeae1f*)  \n",
+    "AGAP006228 (*Coeae2f*)\n",
+    "\n",
+    "Gene amplifications covering these alpha-esterases have been recently associated with resistance to the organophosphate, pirimiphos-methyl [(Nagi *et al.,* 2024)](https://www.biorxiv.org/content/10.1101/2024.02.01.578361v1). Pirimiphos-methyl is widely used in indoor-residual spraying campaigns as the formulation Actellic CS300. \n",
+    "\n",
+    "The genes are orthologous to the Est2 and Est3 genes of *Culex pipiens*, which also confer resistance to organophosphates, and were studied intensely in the late 20th century as an example of evolution due to anthropogenic pressures [(Raymond *et al.,* 1998)](https://doi.org/10.1098/rstb.1998.0322). "
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "fbf2eacc-ee18-425e-a3ee-ad8e53bda5f9",
diff --git a/workflow/notebooks/selection-alert.ipynb b/workflow/notebooks/selection-alert.ipynb
index edeedcd..a9d0a8e 100644
--- a/workflow/notebooks/selection-alert.ipynb
+++ b/workflow/notebooks/selection-alert.ipynb
@@ -62,20 +62,41 @@
    "id": "1f2288aa-fe3d-44c2-88be-aa897d9b4b49",
    "metadata": {},
    "source": [
-    "# example_locus_name\n",
-    "\n",
-    "AGAP004707 (*Vgsc*)\n",
-    "\n",
-    "Mutations in this gene cause resistance to pyrethroid insecticides and DDT."
+    "# SA-1"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "97da6cd4-0dc2-4ba4-8cac-4f93edc4badc",
+   "id": "b29f7a5a-c33d-4f5a-b6d3-9023ab7ebe55",
    "metadata": {},
    "source": [
-    "## Cohorts affected\n",
-    "Overlapping signals of selection are found in the following cohorts. "
+    "## Signals"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9a2a86dd-58c7-4037-b99c-53ede4c54f87",
+   "metadata": {
+    "tags": [
+     "remove-input",
+     "remove-output"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "extra_params = dict()\n",
+    "if use_gcs_cache:\n",
+    "    extra_params[\"url\"] = \"simplecache::gs://vo_agam_release\"\n",
+    "    extra_params[\"simplecache\"] = dict(cache_storage=(here() / \"gcs_cache\").as_posix())\n",
+    "\n",
+    "ag3 = malariagen_data.Ag3(\n",
+    "    # pin the version of the cohorts analysis for reproducibility\n",
+    "    cohorts_analysis=cohorts_analysis,\n",
+    "    results_cache=(here() / \"malariagen_data_cache\").as_posix(),\n",
+    "    **extra_params,\n",
+    ")\n",
+    "ag3"
    ]
   },
   {
@@ -115,56 +136,6 @@
     "region_signals = region_signals.merge(cohorts)"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "346bbbd3-c0f8-4f44-a3ce-e417080d2245",
-   "metadata": {
-    "tags": [
-     "remove-input"
-    ]
-   },
-   "outputs": [],
-   "source": [
-    "cohort_links = ['<a href=\"../cohort/' + row['cohort_id'] + '.html\">' + row[\"cohort_label\"] + \"</a>\" for i, row in region_signals.iterrows()]\n",
-    "html_message = '<li>' + '</li><li>'.join(cohort_links) + '</li>'\n",
-    "HTML(html_message)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "b29f7a5a-c33d-4f5a-b6d3-9023ab7ebe55",
-   "metadata": {},
-   "source": [
-    "## Signals and candidate genes"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "9a2a86dd-58c7-4037-b99c-53ede4c54f87",
-   "metadata": {
-    "tags": [
-     "remove-input",
-     "remove-output"
-    ]
-   },
-   "outputs": [],
-   "source": [
-    "extra_params = dict()\n",
-    "if use_gcs_cache:\n",
-    "    extra_params[\"url\"] = \"simplecache::gs://vo_agam_release\"\n",
-    "    extra_params[\"simplecache\"] = dict(cache_storage=(here() / \"gcs_cache\").as_posix())\n",
-    "\n",
-    "ag3 = malariagen_data.Ag3(\n",
-    "    # pin the version of the cohorts analysis for reproducibility\n",
-    "    cohorts_analysis=cohorts_analysis,\n",
-    "    results_cache=(here() / \"malariagen_data_cache\").as_posix(),\n",
-    "    **extra_params,\n",
-    ")\n",
-    "ag3"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -313,6 +284,41 @@
     "plot_region_summary(df=region_signals.reset_index(), region_name=region_name)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "97da6cd4-0dc2-4ba4-8cac-4f93edc4badc",
+   "metadata": {},
+   "source": [
+    "## Cohorts affected\n",
+    "Overlapping signals of selection are found in the following cohorts. "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "346bbbd3-c0f8-4f44-a3ce-e417080d2245",
+   "metadata": {
+    "tags": [
+     "remove-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "cohort_links = ['<a href=\"../cohort/' + row['cohort_id'] + '.html\">' + row[\"cohort_label\"] + \"</a>\" for i, row in region_signals.iterrows()]\n",
+    "html_message = '<li>' + '</li><li>'.join(cohort_links) + '</li>'\n",
+    "HTML(html_message)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "db71a1cd",
+   "metadata": {},
+   "source": [
+    "## Candidate genes\n",
+    "\n",
+    "AGAP004707 (*Vgsc*) - The Voltage-gated sodium channel (VGSC) is the target of pyrethroids and DDT. Mutations in this gene are associated with knockdown resistance (kdr) to pyrethroids and DDT..."
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "fbf2eacc-ee18-425e-a3ee-ad8e53bda5f9",