fix bootstrap trees printing to a file for --bs-metric ps and --bs-me…
amkozlovpushed 3 commits to dev • d2a4764…ea7102a • yesterday
new branch support metrics: parsimony support (--bs-metric ps), parsi…
amkozlovpushed 4 commits to dev • 9c40cd4…d2a4764 • 6 days ago
new branch support metrics: parsimony support (--bs-metric ps), parsi…
amkozlovpushed 1 commit to ebg • a6c3bfd…d2a4764 • 6 days ago
EBG: cleanup, allow to specify number of parsimony bootstrap trees vi…
amkozlovpushed 1 commit to ebg • fa54f27…a6c3bfd • 7 days ago
EBG: fix wrong feature order, remove debug output
amkozlovpushed 1 commit to ebg • 9111ad7…fa54f27 • 8 days ago
Add Educated Bootstrap Guesser support (WIP). Usage: --bs-metric ebg
allow to exclude MSA sites from the analysis (
#189 )
amkozlovpushed 1 commit to dev • 8ad1683…9c40cd4 • on Jan 17
auto-partitioning with parameter linkage, e.g. GTR/C4 = 4 partitions …
amkozlovpushed 1 commit to dev • 021c458…8ad1683 • on Jan 15
add ARM NEON support, allow to build a portable binary (cmake -DPORTA…
amkozlovpushed 1 commit to dev • 02b3d9e…021c458 • on Jan 9
fix edge case for auto-partitioning
amkozlovpushed 2 commits to dev • c43144a…02b3d9e • on Dec 11, 2024
pythia: add missing features (patterns_per_site, pattern_entropy)
amkozlovpushed 1 commit to dev • 3a8775b…c43144a • on Nov 28, 2024
GTest now requires c++14, make it happy
amkozlovpushed 1 commit to dev • ecdf971…3a8775b • on Nov 21, 2024
check that constraint tree has at least 4 taxa and print a clear erro…
amkozlovpushed 1 commit to dev • e12b46b…ecdf971 • on Nov 21, 2024
upgrade difficulty prediction to Pythia v1.2
amkozlovpushed 1 commit to dev • 97dda13…e12b46b • on Oct 31, 2024
amkozlovpushed 1 commit to dev • 3154fd6…97dda13 • on Oct 24, 2024
amkozlovpushed 58 commits to dev • 12fa8ba…3154fd6 • on Oct 24, 2024
adaptive: support per-rate scalers in ancestral state reconstruction
small improvements to SH-aLRT; add --opt-topology option to choose tr…
implement SH-aLRT branch support (usage: --bs-metric sh)
adaptive: disable pythia if command cannot use difficulty score (eg -…
add raxml8-style rapid bootstrapping (--bs-metric rbs), still require…
adaptive: parallel parsimony bugfix
adaptive: add --pythia command: print MSA difficulty score
adaptive: add coarse-grained parallelization of parsimony, reuse pyth…
add entropy-based auto-partitioning (usage: '--model GTR/P5', '--mode…
bump version number, update download links
improve CPU core count detection in node-sharing scenario (check sche…
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