From 08879170888e0a2bcd70d51420654d39a002fc44 Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Tue, 22 Oct 2024 01:00:24 +0200
Subject: [PATCH] Release v0.6.0

---
 .github/workflows/package.yml   |  6 ++++--
 CHANGELOG.md                    | 20 +++++++++++++++++++-
 docs/_static/json/switcher.json |  7 ++++++-
 pyproject.toml                  |  4 ++--
 src/pyfastani/__init__.py       |  2 +-
 5 files changed, 32 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/package.yml b/.github/workflows/package.yml
index 0d76954..d1d50da 100644
--- a/.github/workflows/package.yml
+++ b/.github/workflows/package.yml
@@ -115,7 +115,7 @@ jobs:
         CIBW_BEFORE_BUILD: pip install cython
         CIBW_BUILD_VERBOSITY: 2
         CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
-        CIBW_TEST_REQUIRES: importlib-resources biopython
+        CIBW_TEST_REQUIRES: importlib-resources
         CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.12
       with:
         output-dir: dist
@@ -148,7 +148,7 @@ jobs:
         CIBW_BEFORE_BUILD: pip install cython
         CIBW_BUILD_VERBOSITY: 2
         CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
-        CIBW_TEST_REQUIRES: importlib-resources biopython
+        CIBW_TEST_REQUIRES: importlib-resources
         CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.12
       with:
         output-dir: dist
@@ -245,6 +245,8 @@ jobs:
     environment: PyPI
     runs-on: ubuntu-latest
     name: Upload
+    permissions:
+      id-token: write
     needs:
     - sdist
     - test-sdist
diff --git a/CHANGELOG.md b/CHANGELOG.md
index c549f04..3fe36d5 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,7 +6,25 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyfastani/compare/v0.5.1...HEAD
+[Unreleased]: https://github.com/althonos/pyfastani/compare/v0.6.0...HEAD
+
+
+## [v0.6.0] - 2024-10-22
+[v0.6.0]: https://github.com/althonos/pyfastani/compare/v0.5.1...v0.6.0
+
+### Changed
+- Rewrite package build using `scikit-build-core`.
+- Update documentation to use the PyData theme.
+- Bump embedded `cpu-features` library to `v0.9.0`.
+
+### Added
+- Support for Python 3.13.
+
+### Fixed
+- Null pointer dereference in FASTA parser deallocation.
+
+### Removed
+- Support for Python 3.6.
 
 
 ## [v0.5.1] - 2024-02-20
diff --git a/docs/_static/json/switcher.json b/docs/_static/json/switcher.json
index cdfbedd..ca265d4 100644
--- a/docs/_static/json/switcher.json
+++ b/docs/_static/json/switcher.json
@@ -1,6 +1,11 @@
 [
     {
-        "name": "v0.5 (latest)",
+        "name": "v0.6 (latest)",
+        "version": "0.6.0",
+        "url": "https://pytantan.readthedocs.io/en/v0.6.0/"
+    },
+    {
+        "name": "v0.5",
         "version": "0.5.1",
         "url": "https://pytantan.readthedocs.io/en/v0.5.1/"
     },
diff --git a/pyproject.toml b/pyproject.toml
index 208c03a..0973a46 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,10 +1,10 @@
 [build-system]
-requires = ["scikit-build-core", "cython >=3.0", "scoring-matrices ~=0.3.0"]
+requires = ["scikit-build-core", "cython >=3.0"]
 build-backend = "scikit_build_core.build"
 
 [project]
 name = "pyfastani"
-version = "0.5.1"
+version = "0.6.0"
 description = "Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation."
 readme = "README.md"
 requires-python = ">=3.7"
diff --git a/src/pyfastani/__init__.py b/src/pyfastani/__init__.py
index d88776e..07398d7 100644
--- a/src/pyfastani/__init__.py
+++ b/src/pyfastani/__init__.py
@@ -12,7 +12,7 @@
 
 __author__ = "Martin Larralde <martin.larralde@embl.de>"
 __license__ = "MIT"
-__version__ = "0.5.1"
+__version__ = "0.6.0"
 
 __doc__ = _fastani.__doc__
 __all__ = [