diff --git a/src/processor/interaction_genetic_processor.py b/src/processor/interaction_genetic_processor.py index 72f04b3..287f7f7 100644 --- a/src/processor/interaction_genetic_processor.py +++ b/src/processor/interaction_genetic_processor.py @@ -370,19 +370,19 @@ def get_data(self): open(self.output_dir + 'genetic_interactions_skipped_entries.tsv', 'w', encoding='utf-8') as skipped_out, \ open(self.output_dir + 'genetic_interactions_mapped_entries.tsv', 'a+', encoding='utf-8') as mapped_out: - tsvout = csv.writer(tsvout, quoting=csv.QUOTE_NONE, delimiter='\t') - fb_out = csv.writer(fb_out, quoting=csv.QUOTE_NONE, delimiter='\t') - wb_out = csv.writer(wb_out, quoting=csv.QUOTE_NONE, delimiter='\t') - xb_out = csv.writer(xb_out, quoting=csv.QUOTE_NONE, delimiter='\t') - xbxl_out = csv.writer(xbxl_out, quoting=csv.QUOTE_NONE, delimiter='\t') - xbxt_out = csv.writer(xbxt_out, quoting=csv.QUOTE_NONE, delimiter='\t') - zfin_out = csv.writer(zfin_out, quoting=csv.QUOTE_NONE, delimiter='\t') - sgd_out = csv.writer(sgd_out, quoting=csv.QUOTE_NONE, delimiter='\t') - rgd_out = csv.writer(rgd_out, quoting=csv.QUOTE_NONE, delimiter='\t') - mgi_out = csv.writer(mgi_out, quoting=csv.QUOTE_NONE, delimiter='\t') - human_out = csv.writer(human_out, quoting=csv.QUOTE_NONE, delimiter='\t') - skipped_out = csv.writer(skipped_out, quoting=csv.QUOTE_NONE, delimiter='\t') - mapped_out = csv.writer(mapped_out, quoting=csv.QUOTE_NONE, delimiter='\t') + tsvout = csv.writer(tsvout, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + fb_out = csv.writer(fb_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + wb_out = csv.writer(wb_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + xb_out = csv.writer(xb_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + xbxl_out = csv.writer(xbxl_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + xbxt_out = csv.writer(xbxt_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + zfin_out = csv.writer(zfin_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + sgd_out = csv.writer(sgd_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + rgd_out = csv.writer(rgd_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + mgi_out = csv.writer(mgi_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + human_out = csv.writer(human_out, quotechar='\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + skipped_out = csv.writer(skipped_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + mapped_out = csv.writer(mapped_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') # This list is now sorted phylogenetically for the header to be sorted out_write_list = [human_out, rgd_out, mgi_out, xb_out, xbxl_out, xbxt_out, zfin_out, fb_out, wb_out, sgd_out] diff --git a/src/processor/interaction_molecular_processor.py b/src/processor/interaction_molecular_processor.py index 4b0c123..14c77a4 100644 --- a/src/processor/interaction_molecular_processor.py +++ b/src/processor/interaction_molecular_processor.py @@ -450,20 +450,20 @@ def get_data(self): open(self.output_dir + 'molecular_interactions_skipped_entries.txt', 'w', encoding='utf-8') as skipped_out, \ open(self.output_dir + 'molecular_interactions_mapped_entries.txt', 'a+', encoding='utf-8') as mapped_out: - mapped_out = csv.writer(mapped_out, quoting=csv.QUOTE_NONE, delimiter='\t') - tsvout = csv.writer(tsvout, quoting=csv.QUOTE_NONE, delimiter='\t') - skipped_out = csv.writer(skipped_out, quoting=csv.QUOTE_NONE, delimiter='\t') - sarscov2_out = csv.writer(sarscov2_out, quoting=csv.QUOTE_NONE, delimiter='\t') - fb_out = csv.writer(fb_out, quoting=csv.QUOTE_NONE, delimiter='\t') - wb_out = csv.writer(wb_out, quoting=csv.QUOTE_NONE, delimiter='\t') - xb_out = csv.writer(xb_out, quoting=csv.QUOTE_NONE, delimiter='\t') - xbxl_out = csv.writer(xbxl_out, quoting=csv.QUOTE_NONE, delimiter='\t') - xbxt_out = csv.writer(xbxt_out, quoting=csv.QUOTE_NONE, delimiter='\t') - zfin_out = csv.writer(zfin_out, quoting=csv.QUOTE_NONE, delimiter='\t') - sgd_out = csv.writer(sgd_out, quoting=csv.QUOTE_NONE, delimiter='\t') - rgd_out = csv.writer(rgd_out, quoting=csv.QUOTE_NONE, delimiter='\t') - mgi_out = csv.writer(mgi_out, quoting=csv.QUOTE_NONE, delimiter='\t') - human_out = csv.writer(human_out, quoting=csv.QUOTE_NONE, delimiter='\t') + mapped_out = csv.writer(mapped_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + tsvout = csv.writer(tsvout, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + skipped_out = csv.writer(skipped_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + sarscov2_out = csv.writer(sarscov2_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + fb_out = csv.writer(fb_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + wb_out = csv.writer(wb_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + xb_out = csv.writer(xb_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + xbxl_out = csv.writer(xbxl_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + xbxt_out = csv.writer(xbxt_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + zfin_out = csv.writer(zfin_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + sgd_out = csv.writer(sgd_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + rgd_out = csv.writer(rgd_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + mgi_out = csv.writer(mgi_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') + human_out = csv.writer(human_out, quotechar = '\u00e2', quoting=csv.QUOTE_NONE, delimiter='\t') # This list is now sorted phylogenetically for the header to be sorted out_write_list = [human_out, rgd_out, mgi_out, xb_out, xbxl_out, xbxt_out, zfin_out, fb_out, wb_out, sgd_out, sarscov2_out]