From 19d0b7056187745a6c37c37d085f66f15532826e Mon Sep 17 00:00:00 2001 From: ianlongden Date: Tue, 21 Mar 2023 10:58:32 -0400 Subject: [PATCH] nmypy/flake 8 fixes --- .../oneoff_scripts/update_reference_htmlentity.py | 8 ++++---- mypy.config | 2 +- requirements.dev.txt | 1 - requirements.txt | 2 -- 4 files changed, 5 insertions(+), 8 deletions(-) diff --git a/agr_literature_service/lit_processing/oneoff_scripts/update_reference_htmlentity.py b/agr_literature_service/lit_processing/oneoff_scripts/update_reference_htmlentity.py index c9dcef93f..14f522607 100644 --- a/agr_literature_service/lit_processing/oneoff_scripts/update_reference_htmlentity.py +++ b/agr_literature_service/lit_processing/oneoff_scripts/update_reference_htmlentity.py @@ -55,10 +55,10 @@ def update_author_entity(): setattr(author_db_obj, key, value) # print("will update key:" + key) db_session.commit() - ref_db_obj = db_session.query(ReferenceModel).filter(ReferenceModel.reference_id == reference_id).first() - if ref_db_obj: - curie = ref_db_obj.curie - # update_citation(db_session, curie) + db_session.query(ReferenceModel).filter(ReferenceModel.reference_id == reference_id).first() + # if ref_db_obj: + # curie = ref_db_obj.curie + # update_citation(db_session, curie) db_session.close() except Exception as e: print('Error: ' + str(type(e))) diff --git a/mypy.config b/mypy.config index db9bbb11f..ebcf395fd 100644 --- a/mypy.config +++ b/mypy.config @@ -1,3 +1,3 @@ [mypy] ignore_missing_imports = True -plugins = sqlalchemy.ext.mypy.plugin + diff --git a/requirements.dev.txt b/requirements.dev.txt index f4a7ca5e1..1b2409fff 100644 --- a/requirements.dev.txt +++ b/requirements.dev.txt @@ -17,5 +17,4 @@ types-ujson types-docutils types-python-dateutil types-retry -sqlalchemy[mypy] alembic_utils \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index db8da1330..d9ae7648f 100644 --- a/requirements.txt +++ b/requirements.txt @@ -28,8 +28,6 @@ sqlalchemy_schemadisplay==1.3 git+https://github.com/alliance-genome/agr_fastapi_okta@v1.1#egg=fastapi_okta requests -sqlalchemy[mypy] - # xml_processing bs4==0.0.1