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Annotate DMRs with .gff files? #301

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Ge0rges opened this issue Sep 25, 2023 · 2 comments
Closed

Annotate DMRs with .gff files? #301

Ge0rges opened this issue Sep 25, 2023 · 2 comments

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@Ge0rges
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Ge0rges commented Sep 25, 2023

Hello,

I was wondering if it's possible to annotate the genomes being analyzed using the standard GFF format? This format is used by popular annotation tools such as Prodigal and Prokka.

Thanks
@alexg9010
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Hi @Ge0rges

There is some code available to achieve this: BIMSBbioinfo/genomation#192 .

Best,
Alex

@Ge0rges Ge0rges closed this as completed Oct 8, 2023
@Ge0rges
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Ge0rges commented Oct 8, 2023

This was posted on the google forum after finding that referenced issue. I closed this to minimize duplication. Ref: https://groups.google.com/g/methylkit_discussion/c/Hyk-PsEWsac

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@Ge0rges @alexg9010