diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index b0aba2c..bcd4e9b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -40,10 +40,6 @@ jobs: chmod +x nextflow sudo mv nextflow /usr/local/bin/ - - name: Run pipeline with test data - run: | - nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results - - name: Login to Docker Hub uses: docker/login-action@v1 with: @@ -53,4 +49,8 @@ jobs: - name: Build and publish to docker run: | docker build --platform linux/amd64 -t adamd3/strainseq:latest . - docker push adamd3/strainseq:latest \ No newline at end of file + docker push adamd3/strainseq:latest + + - name: Run pipeline with test data + run: | + nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results