setup.py

#!/usr/bin/env python

import re
import pathlib
import setuptools

# extract the current version
init_file = pathlib.Path(__file__).parent.resolve().joinpath('neurite/__init__.py')
init_text = open(init_file, 'rt').read()
pattern = r"^__version__ = ['\"]([^'\"]*)['\"]"
match = re.search(pattern, init_text, re.M)
if not match:
    raise RuntimeError(f'Unable to find __version__ in {init_file}')
version = match.group(1)

# run setup
setuptools.setup(
    name='neurite',
    version=version,
    license='MIT',
    description='Neural Networks Toolbox for Medical Imaging',
    url='https://github.com/adalca/neurite',
    keywords=['imaging', 'cnn'],
    packages=setuptools.find_packages(),
    python_requires='>=3.6',
    classifiers=[
        'Intended Audience :: Science/Research',
        'Programming Language :: Python :: 3',
        'License :: OSI Approved :: MIT License',
        'Operating System :: OS Independent',
    ],
    install_requires=[
        'packaging',
        'six',
        'numpy>=1.17',
        'scipy',
        'tqdm',
        'matplotlib',
        'scikit-learn',
        'nibabel',
        'pystrum>=0.2',
    ]
)