NAMESPACE

# Generated by roxygen2: do not edit by hand

export("!!!")
export("!!")
export(.data)
export(.env)
export(AcidPlotsTestsUrl)
export(acid_discrete_coord_flip)
export(acid_geom_abline)
export(acid_geom_bar)
export(acid_geom_label)
export(acid_geom_label_average)
export(acid_geom_label_repel)
export(acid_pretty_breaks)
export(acid_scale_color_continuous)
export(acid_scale_color_discrete)
export(acid_scale_color_synesthesia_c)
export(acid_scale_color_synesthesia_d)
export(acid_scale_fill_continuous)
export(acid_scale_fill_discrete)
export(acid_scale_fill_synesthesia_c)
export(acid_scale_fill_synesthesia_d)
export(acid_scale_y_continuous_nopad)
export(acid_theme_dark)
export(acid_theme_dracula)
export(acid_theme_light)
export(aes)
export(after_stat)
export(blueYellow)
export(darkPalette)
export(draculaPalette)
export(ggplot)
export(ggsave)
export(gradient)
export(iOSDarkPalette)
export(iOSLightPalette)
export(lightPalette)
export(log_breaks)
export(macOSDarkPalette)
export(macOSLightPalette)
export(matchLabels)
export(percent)
export(plotBarcodeRanks)
export(plotCellCounts)
export(plotCellCountsPerCluster)
export(plotCellTypesPerCluster)
export(plotCorrelation)
export(plotCorrelationHeatmap)
export(plotCounts)
export(plotCountsCorrelation)
export(plotCountsCorrelationHeatmap)
export(plotCountsPerBiotype)
export(plotCountsPerBroadClass)
export(plotCountsPerCell)
export(plotCountsPerFeature)
export(plotCountsVsFeatures)
export(plotDots)
export(plotFeature)
export(plotFeaturesDetected)
export(plotFeaturesPerCell)
export(plotGenderMarkers)
export(plotHeatmap)
export(plotKnownMarkers)
export(plotMarker)
export(plotMitoRatio)
export(plotMitoVsCoding)
export(plotNovelty)
export(plotPca)
export(plotQc)
export(plotQuantileHeatmap)
export(plotReducedDim)
export(plotStackedBarPlot)
export(plotSums)
export(plotTotalCounts)
export(plotTsne)
export(plotUmap)
export(plotUpset)
export(plotViolin)
export(plotWaterfall)
export(plotZerosVsDepth)
export(plot_annotation)
export(plot_layout)
export(pretty_breaks)
export(purpleOrange)
export(scale_colour_synesthesia_c)
export(scale_colour_synesthesia_d)
export(sym)
export(syms)
export(synesthesia)
export(synesthesia_pal)
export(theme_set)
export(wrap_plots)
exportMethods(plotBarcodeRanks)
exportMethods(plotCellCounts)
exportMethods(plotCellCountsPerCluster)
exportMethods(plotCellTypesPerCluster)
exportMethods(plotCorrelation)
exportMethods(plotCorrelationHeatmap)
exportMethods(plotCounts)
exportMethods(plotCountsCorrelation)
exportMethods(plotCountsCorrelationHeatmap)
exportMethods(plotCountsPerBiotype)
exportMethods(plotCountsPerBroadClass)
exportMethods(plotCountsPerCell)
exportMethods(plotCountsPerFeature)
exportMethods(plotCountsVsFeatures)
exportMethods(plotDots)
exportMethods(plotFeature)
exportMethods(plotFeaturesDetected)
exportMethods(plotFeaturesPerCell)
exportMethods(plotGenderMarkers)
exportMethods(plotHeatmap)
exportMethods(plotKnownMarkers)
exportMethods(plotMarker)
exportMethods(plotMitoRatio)
exportMethods(plotMitoVsCoding)
exportMethods(plotNovelty)
exportMethods(plotPca)
exportMethods(plotQc)
exportMethods(plotQuantileHeatmap)
exportMethods(plotReducedDim)
exportMethods(plotStackedBarPlot)
exportMethods(plotSums)
exportMethods(plotTotalCounts)
exportMethods(plotTsne)
exportMethods(plotUmap)
exportMethods(plotUpset)
exportMethods(plotViolin)
exportMethods(plotWaterfall)
exportMethods(plotZerosVsDepth)
importClassesFrom(AcidSingleCell,KnownMarkers)
importClassesFrom(Matrix,Matrix)
importClassesFrom(S4Vectors,DFrame)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(AcidBase,methodFormals)
importFrom(AcidBase,printString)
importFrom(AcidBase,standardizeCall)
importFrom(AcidBase,strReplaceNa)
importFrom(AcidCLI,abort)
importFrom(AcidCLI,alert)
importFrom(AcidCLI,alertInfo)
importFrom(AcidCLI,alertWarning)
importFrom(AcidCLI,dl)
importFrom(AcidCLI,toInlineString)
importFrom(AcidExperiment,matchInterestingGroups)
importFrom(AcidGenerics,"interestingGroups<-")
importFrom(AcidGenerics,GeneToSymbol)
importFrom(AcidGenerics,aggregateCellsToSamples)
importFrom(AcidGenerics,as.SummarizedExperiment)
importFrom(AcidGenerics,barcodeRanksPerSample)
importFrom(AcidGenerics,calculateMetrics)
importFrom(AcidGenerics,camelCase)
importFrom(AcidGenerics,cellCountsPerCluster)
importFrom(AcidGenerics,cellTypesPerCluster)
importFrom(AcidGenerics,convertGenesToSymbols)
importFrom(AcidGenerics,interestingGroups)
importFrom(AcidGenerics,intersectionMatrix)
importFrom(AcidGenerics,leftJoin)
importFrom(AcidGenerics,makeLabel)
importFrom(AcidGenerics,makeTitle)
importFrom(AcidGenerics,mapGenesToRownames)
importFrom(AcidGenerics,mapGenesToSymbols)
importFrom(AcidGenerics,matchSampleColumn)
importFrom(AcidGenerics,melt)
importFrom(AcidGenerics,metrics)
importFrom(AcidGenerics,mutateIf)
importFrom(AcidGenerics,nonzeroRowsAndCols)
importFrom(AcidGenerics,plotBarcodeRanks)
importFrom(AcidGenerics,plotCellCounts)
importFrom(AcidGenerics,plotCellCountsPerCluster)
importFrom(AcidGenerics,plotCellTypesPerCluster)
importFrom(AcidGenerics,plotCorrelation)
importFrom(AcidGenerics,plotCorrelationHeatmap)
importFrom(AcidGenerics,plotCounts)
importFrom(AcidGenerics,plotCountsCorrelation)
importFrom(AcidGenerics,plotCountsCorrelationHeatmap)
importFrom(AcidGenerics,plotCountsPerBiotype)
importFrom(AcidGenerics,plotCountsPerBroadClass)
importFrom(AcidGenerics,plotCountsPerCell)
importFrom(AcidGenerics,plotCountsPerFeature)
importFrom(AcidGenerics,plotCountsVsFeatures)
importFrom(AcidGenerics,plotDots)
importFrom(AcidGenerics,plotFeature)
importFrom(AcidGenerics,plotFeaturesDetected)
importFrom(AcidGenerics,plotFeaturesPerCell)
importFrom(AcidGenerics,plotGenderMarkers)
importFrom(AcidGenerics,plotHeatmap)
importFrom(AcidGenerics,plotKnownMarkers)
importFrom(AcidGenerics,plotMarker)
importFrom(AcidGenerics,plotMitoRatio)
importFrom(AcidGenerics,plotMitoVsCoding)
importFrom(AcidGenerics,plotNovelty)
importFrom(AcidGenerics,plotPca)
importFrom(AcidGenerics,plotQc)
importFrom(AcidGenerics,plotQuantileHeatmap)
importFrom(AcidGenerics,plotReducedDim)
importFrom(AcidGenerics,plotStackedBarPlot)
importFrom(AcidGenerics,plotSums)
importFrom(AcidGenerics,plotTotalCounts)
importFrom(AcidGenerics,plotTsne)
importFrom(AcidGenerics,plotUmap)
importFrom(AcidGenerics,plotUpset)
importFrom(AcidGenerics,plotViolin)
importFrom(AcidGenerics,plotWaterfall)
importFrom(AcidGenerics,plotZerosVsDepth)
importFrom(AcidGenerics,sampleData)
importFrom(AcidGenerics,sem)
importFrom(AcidGenerics,snakeCase)
importFrom(AcidGenerics,uniteInterestingGroups)
importFrom(AcidGenerics,zerosVsDepth)
importFrom(AcidMarkdown,markdownHeader)
importFrom(Biobase,sampleNames)
importFrom(BiocGenerics,append)
importFrom(BiocGenerics,counts)
importFrom(BiocGenerics,do.call)
importFrom(BiocGenerics,organism)
importFrom(BiocGenerics,rbind)
importFrom(BiocGenerics,t)
importFrom(BiocGenerics,unlist)
importFrom(BiocGenerics,unsplit)
importFrom(BiocGenerics,var)
importFrom(IRanges,DataFrameList)
importFrom(IRanges,SplitDataFrameList)
importFrom(IRanges,quantile)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,aggregate)
importFrom(S4Vectors,complete.cases)
importFrom(S4Vectors,decode)
importFrom(S4Vectors,head)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,merge)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,na.omit)
importFrom(S4Vectors,sort)
importFrom(S4Vectors,split)
importFrom(SingleCellExperiment,"reducedDimNames<-")
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,annotation_logticks)
importFrom(ggplot2,continuous_scale)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,discrete_scale)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,expansion)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_step)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,position_jitterdodge)
importFrom(ggplot2,scale_colour_continuous)
importFrom(ggplot2,scale_colour_discrete)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_radius)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_ecdf)
importFrom(ggplot2,stat_summary)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_linedraw)
importFrom(ggplot2,theme_set)
importFrom(ggplot2,vars)
importFrom(ggplot2,waiver)
importFrom(goalie,allAreHexColors)
importFrom(goalie,allAreMatchingRegex)
importFrom(goalie,allAreNonNegative)
importFrom(goalie,allArePositive)
importFrom(goalie,areDisjointSets)
importFrom(goalie,areSetEqual)
importFrom(goalie,assert)
importFrom(goalie,bapply)
importFrom(goalie,hasClusters)
importFrom(goalie,hasColnames)
importFrom(goalie,hasCols)
importFrom(goalie,hasDims)
importFrom(goalie,hasLength)
importFrom(goalie,hasMetrics)
importFrom(goalie,hasMultipleSamples)
importFrom(goalie,hasNames)
importFrom(goalie,hasNoDuplicates)
importFrom(goalie,hasNonzeroRowsAndCols)
importFrom(goalie,hasRownames)
importFrom(goalie,hasRows)
importFrom(goalie,hasSubset)
importFrom(goalie,hasUniqueCols)
importFrom(goalie,hasValidDimnames)
importFrom(goalie,isAlpha)
importFrom(goalie,isCharacter)
importFrom(goalie,isDark)
importFrom(goalie,isFlag)
importFrom(goalie,isGgscale)
importFrom(goalie,isGreaterThanOrEqualTo)
importFrom(goalie,isHeaderLevel)
importFrom(goalie,isHexColorFunction)
importFrom(goalie,isInClosedRange)
importFrom(goalie,isInLeftOpenRange)
importFrom(goalie,isInRange)
importFrom(goalie,isInRightOpenRange)
importFrom(goalie,isInt)
importFrom(goalie,isIntegerish)
importFrom(goalie,isMatchingRegex)
importFrom(goalie,isNonNegative)
importFrom(goalie,isNumber)
importFrom(goalie,isPositive)
importFrom(goalie,isScalar)
importFrom(goalie,isString)
importFrom(goalie,isSubset)
importFrom(goalie,requireNamespaces)
importFrom(grDevices,axisTicks)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(grid,arrow)
importFrom(grid,unit)
importFrom(methods,as)
importFrom(methods,formalArgs)
importFrom(methods,is)
importFrom(methods,setMethod)
importFrom(methods,show)
importFrom(methods,signature)
importFrom(methods,validObject)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,plot_layout)
importFrom(patchwork,wrap_plots)
importFrom(rlang,"!!!")
importFrom(rlang,"!!")
importFrom(rlang,.data)
importFrom(rlang,.env)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(scales,comma)
importFrom(scales,gradient_n_pal)
importFrom(scales,log_breaks)
importFrom(scales,percent)
importFrom(scales,pretty_breaks)
importFrom(stats,as.formula)
importFrom(stats,dist)
importFrom(stats,ecdf)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,reorder)
importFrom(utils,packageName)
importFrom(utils,packageVersion)
importMethodsFrom(AcidBase,intersectionMatrix)
importMethodsFrom(AcidBase,sem)
importMethodsFrom(AcidExperiment,"interestingGroups<-")
importMethodsFrom(AcidExperiment,aggregate)
importMethodsFrom(AcidExperiment,as.SummarizedExperiment)
importMethodsFrom(AcidExperiment,calculateMetrics)
importMethodsFrom(AcidExperiment,convertGenesToSymbols)
importMethodsFrom(AcidExperiment,decode)
importMethodsFrom(AcidExperiment,interestingGroups)
importMethodsFrom(AcidExperiment,mapGenesToRownames)
importMethodsFrom(AcidExperiment,mapGenesToSymbols)
importMethodsFrom(AcidExperiment,matchSampleColumn)
importMethodsFrom(AcidExperiment,melt)
importMethodsFrom(AcidExperiment,metrics)
importMethodsFrom(AcidExperiment,nonzeroRowsAndCols)
importMethodsFrom(AcidExperiment,organism)
importMethodsFrom(AcidExperiment,sampleData)
importMethodsFrom(AcidExperiment,uniteInterestingGroups)
importMethodsFrom(AcidGenomes,GeneToSymbol)
importMethodsFrom(AcidGenomes,organism)
importMethodsFrom(AcidPlyr,leftJoin)
importMethodsFrom(AcidPlyr,melt)
importMethodsFrom(AcidPlyr,mutateIf)
importMethodsFrom(AcidSingleCell,aggregate)
importMethodsFrom(AcidSingleCell,aggregateCellsToSamples)
importMethodsFrom(AcidSingleCell,barcodeRanksPerSample)
importMethodsFrom(AcidSingleCell,cellCountsPerCluster)
importMethodsFrom(AcidSingleCell,cellTypesPerCluster)
importMethodsFrom(AcidSingleCell,melt)
importMethodsFrom(AcidSingleCell,metrics)
importMethodsFrom(AcidSingleCell,sampleData)
importMethodsFrom(AcidSingleCell,zerosVsDepth)
importMethodsFrom(pipette,decode)
importMethodsFrom(syntactic,camelCase)
importMethodsFrom(syntactic,makeLabel)
importMethodsFrom(syntactic,makeTitle)
importMethodsFrom(syntactic,snakeCase)