DESCRIPTION

Package: AcidPlots
Title: Acid Genomics Plot Functions and Themes
Description: Functions for plotting genomic data.
Version: 0.7.3
Date: 2024-03-27
Authors@R: c(
    person(
        "Michael", "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL:
    https://r.acidgenomics.com/packages/acidplots/,
    https://github.com/acidgenomics/r-acidplots/
BugReports: https://github.com/acidgenomics/r-acidplots/issues/
License: AGPL-3
Encoding: UTF-8
Depends: R (>= 4.3)
Imports:
    AcidBase (>= 0.7.3),
    AcidCLI (>= 0.3.0),
    AcidExperiment (>= 0.5.4),
    AcidGenerics (>= 0.7.7),
    AcidGenomes (>= 0.7.2),
    AcidMarkdown (>= 0.3.0),
    AcidPlyr (>= 0.5.4),
    AcidSingleCell (>= 0.4.2),
    Biobase (>= 2.62.0),
    BiocGenerics (>= 0.48.0),
    IRanges (>= 2.36.0),
    Matrix (>= 1.6.5),
    S4Vectors (>= 0.40.0),
    SingleCellExperiment (>= 1.24.0),
    SummarizedExperiment (>= 1.32.0),
    ggplot2 (>= 3.5.0),
    goalie (>= 0.7.7),
    patchwork (>= 1.2.0),
    pipette (>= 0.15.2),
    rlang (>= 1.1.3),
    scales (>= 1.3.0),
    syntactic (>= 0.7.1),
    grDevices,
    grid,
    methods,
    stats,
    utils
Suggests:
    AcidTest (>= 0.9.0),
    ComplexUpset (>= 1.3.3),
    DropletUtils (>= 1.22.0),
    RColorBrewer (>= 1.1.3),
    ggpmisc (>= 0.5.5),
    ggrepel (>= 0.9.5),
    ggridges (>= 0.5.6),
    matrixStats (>= 1.2.0),
    pheatmap (>= 1.0.12),
    testthat (>= 3.2.1),
    viridis (>= 0.6.5)
Additional_repositories: https://r.acidgenomics.com
Config/testthat/edition: 3
Config/testthat/parallel: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Visualization