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Possible to export network object from GrapeTree-Standalone? #101

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matbeale opened this issue Jul 15, 2022 · 0 comments
Open

Possible to export network object from GrapeTree-Standalone? #101

matbeale opened this issue Jul 15, 2022 · 0 comments

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@matbeale
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matbeale commented Jul 15, 2022

I mostly work with WGS data, and I generate my own maximum likelihood phylogenies, but for some datasets I find the easy MST representation GrapeTree offers really useful, so input my trees into the GrapeTree-Standalone package. However, I would like to be able to access the MST network object, e.g. so I can change the colour schemes programmatically, or so I can perform network analyses using e.g. iGraph. Is there a way to export the network in an iGraph readable format from GrapeTree-Standalone?

Thanks,
Mat

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