.travis.yml

language: perl

perl:
  - "5.22"
  - "5.18"
  - "5.12"

install:
  # Install conda + bioconda
  - wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda config --add channels bioconda
  - conda update -q conda
  - conda info -a
  # Create environment with FastQC and cutadapt
  - conda create -q -n test-environment fastqc cutadapt
  - source activate test-environment

script:
  - ./trim_galore test_files/illumina_100K.fastq.gz
  - ./trim_galore test_files/nextera_100K.fastq.gz
  - ./trim_galore test_files/smallRNA_100K.fastq.gz
  - ./trim_galore test_files/4_seqs_with_Ns.fastq.gz
  # These commands are supposed to fail.
  - ./trim_galore test_files/colorspace_file.fastq && return 1 || return 0
  - ./trim_galore test_files/truncated.fq.gz && return 1 || return 0
  - ./trim_galore test_files/empty_file.fastq && return 1 || return 0