testing.yaml

name: CI Pipeline

on:
  pull_request:
    type: [ opened, synchronize ]
  push:
    branches: [ main ]

env:
  WANDB_MODE: offline
  ZETTA_USER: test
  ZETTA_PROJECT: test
  CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
  #SETUPTOOLS_ENABLE_FEATURES: legacy-editable

jobs:
  pytest:
    strategy:
      matrix:
        os:
          - ubuntu-latest
        python-version:
          - "3.10"
          - "3.11"
    runs-on: ${{ matrix.os }}
    steps:
      - name: Get token from Github App
        uses: actions/create-github-app-token@v1
        id: app_token
        with:
          app-id: ${{ secrets.APP_ID }}
          private-key: ${{ secrets.APP_PEM }}
          # owner is required, otherwise the creds will fail the checkout step
          owner: ${{ github.repository_owner }}

      - name: Checkout from GitHub
        uses: actions/checkout@v4
        with:
          lfs: 'false'
          submodules: true
          ssh-key: ${{ secrets.git_ssh_key  }}
          token: ${{ steps.app_token.outputs.token }}
      - name: Get changed files
        id: changed-py-files
        uses: tj-actions/changed-files@v41
        with:
          files: |
            **/*.py

      - name: Install libboost
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: sudo apt install libboost-dev
      - name: Setup Python
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
          architecture: x64
          cache: 'pip'
      - name: Setup Go
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        uses: actions/setup-go@v4
        with:
          go-version: '1.18.4'
      - name: Install Python dependencies
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: pip install -e '.[modules, test]'
      - name: Install CUE
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: go install cuelang.org/go/cmd/cue@v0.6.0
      - name: Run pytest
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: coverage run -m py.test ./tests/unit
      - name: Send coverage repot to codecov
        uses: codecov/codecov-action@v3
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        with:
          files: /home/runner/work/zetta_utils/zetta_utils/coverage.xml



  pylint-isort:
    strategy:
      matrix:
        os:
          - ubuntu-latest
        python-version:
          - "3.10"
          - "3.11"
    runs-on: ${{ matrix.os }}
    steps:
      - name: Get token from Github App
        uses: actions/create-github-app-token@v1
        id: app_token
        with:
          app-id: ${{ secrets.APP_ID }}
          private-key: ${{ secrets.APP_PEM }}
          # owner is required, otherwise the creds will fail the checkout step
          owner: ${{ github.repository_owner }}

      - name: Checkout from GitHub
        uses: actions/checkout@v4
        with:
          lfs: 'false'
          submodules: true
          ssh-key: ${{ secrets.git_ssh_key  }}
          token: ${{ steps.app_token.outputs.token }}
      - name: Get changed files
        id: changed-py-files
        uses: tj-actions/changed-files@v41
        with:
          files: |
            **/*.py
      - name: Install libboost
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: sudo apt install libboost-dev
      - name: Setup Python
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
          architecture: x64
          cache: 'pip'
      - name: Install Python dependencies
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: pip install -e '.[modules, test]'
      - name: Run pylint
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: pylint ${{ steps.changed-py-files.outputs.all_changed_files }}
      - name: Run isort
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: isort --check-only --df --verbose --om --profile black .
  mypy:
    strategy:
      matrix:
        os:
          - ubuntu-latest
        python-version:
          - "3.10"
          - "3.11"
    runs-on: ${{ matrix.os }}
    steps:
      - name: Get token from Github App
        uses: actions/create-github-app-token@v1
        id: app_token
        with:
          app-id: ${{ secrets.APP_ID }}
          private-key: ${{ secrets.APP_PEM }}
          # owner is required, otherwise the creds will fail the checkout step
          owner: ${{ github.repository_owner }}

      - name: Checkout from GitHub
        uses: actions/checkout@v4
        with:
          lfs: 'false'
          submodules: true
          ssh-key: ${{ secrets.git_ssh_key  }}
          token: ${{ steps.app_token.outputs.token }}
      - name: Get changed files
        id: changed-py-files
        uses: tj-actions/changed-files@v41
        with:
          files: |
            **/*.py
      - name: Install libboost
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: sudo apt install libboost-dev
      - name: Setup Python
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
          architecture: x64
          cache: 'pip'
      - name: Install Python dependencies
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: pip install -e '.[modules, test]'
      - name: Run mypy
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true' }}
        run: mypy .

  test-docs:
    strategy:
      matrix:
        os:
          - ubuntu-latest
        python-version:
          - "3.11"
    runs-on: ${{ matrix.os }}
    steps:
      - name: Get token from Github App
        uses: actions/create-github-app-token@v1
        id: app_token
        with:
          app-id: ${{ secrets.APP_ID }}
          private-key: ${{ secrets.APP_PEM }}
          # owner is required, otherwise the creds will fail the checkout step
          owner: ${{ github.repository_owner }}

      - name: Checkout from GitHub
        uses: actions/checkout@v4
        with:
          lfs: 'false'
          submodules: true
          ssh-key: ${{ secrets.git_ssh_key  }}
          token: ${{ steps.app_token.outputs.token }}
      - name: Get changed files
        id: changed-py-files
        uses: tj-actions/changed-files@v41
        with:
          files: |
            **/*.py
      - name: Get changed files
        id: changed-docs-files
        uses: tj-actions/changed-files@v41
        with:
          files: |
            **/*.rst
      - name: Install libboost
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true'  || steps.changed-docs-files.outputs.any_changed == 'true'}}
        run: sudo apt install libboost-dev
      - name: Setup Python
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true'  || steps.changed-docs-files.outputs.any_changed == 'true'}}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
          architecture: x64
          cache: 'pip'
      - name: Install Python dependencies
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true'  || steps.changed-docs-files.outputs.any_changed == 'true'}}
        run: pip install -e '.[all]'
      - name: Doctest
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true'  || steps.changed-docs-files.outputs.any_changed == 'true'}}
        run: make -C docs doctest
      - name: Build Docs
        if: ${{ steps.changed-py-files.outputs.any_changed == 'true'  || steps.changed-docs-files.outputs.any_changed == 'true'}}
        run:  make -C docs html

  all-checks-test:
    runs-on: ubuntu-20.04
    needs: [mypy, pytest, pylint-isort, test-docs]
    if: always()
    steps:
      - name: Success
        if: ${{ !(contains(needs.*.result, 'failure')) }}
        run: exit 0
      - name: Failure
        if: ${{ contains(needs.*.result, 'failure') }}
        run: exit 1