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Implement (G)LMM analysis using external R binary #55

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5 tasks done
paulmueller opened this issue Oct 23, 2020 · 0 comments
Closed
5 tasks done

Implement (G)LMM analysis using external R binary #55

paulmueller opened this issue Oct 23, 2020 · 0 comments
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enhancement New feature or request priority: high

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@paulmueller
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paulmueller commented Oct 23, 2020 •
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TODO:

  • Write documentation with screenshots
  • Add warning to docs that it currently does not work with frozen app on macOS (R/lme4 analysis does not work in frozen application on macOS #73)
  • Add settings entry so user can define own R binary
  • Tell the user that he has to add R to the path in the R settings on macOS.
  • Modify docs section where Shape-Out 2 is compared to Shape-Out 1
@paulmueller paulmueller added the enhancement New feature or request label Oct 23, 2020
paulmueller added a commit that referenced this issue Feb 12, 2021
@paulmueller
feat: rudimentary LMM analysis (#55)
79c659b
paulmueller added a commit that referenced this issue Feb 15, 2021
@paulmueller
tests: add basic test for lme4 (#55)
49a09b0
paulmueller added a commit that referenced this issue Feb 15, 2021
@paulmueller
enh: show wait cursor when computing lme4 (#55)
c0f6c82
paulmueller added a commit that referenced this issue Feb 16, 2021
@paulmueller
enh: set R executable and display R version in preferences (#55)
f9a9cdf
paulmueller added a commit that referenced this issue Feb 16, 2021
@paulmueller
enh: set monospace font with Courier placeholder for lme4 results (#55)
f74c442
paulmueller added a commit that referenced this issue Feb 16, 2021
@paulmueller
docs: cleanup UI (#55)
4481a8f
paulmueller added a commit that referenced this issue Feb 17, 2021
@paulmueller
docs: add basic LMM analysis example (#55)
d2589d2
paulmueller added a commit that referenced this issue Feb 17, 2021
@paulmueller
docs: add differential feature analysis LMM (#55)
b83dcf5
paulmueller added a commit that referenced this issue Feb 17, 2021
@paulmueller
docs: add warning that LMM does not work on frozen macOS app (#55)
598ce80
paulmueller added a commit that referenced this issue Feb 17, 2021
@paulmueller
docs: remove part of docs that says Shape-Out 2 cannot do LMM (#55)
3a18753
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@paulmueller